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    SDCBP2 syndecan binding protein 2 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 749345, updated on 29-Mar-2024

    Summary

    Official Symbol
    SDCBP2provided by VGNC
    Official Full Name
    syndecan binding protein 2provided by VGNC
    Primary source
    VGNC:VGNC:6261
    See related
    Ensembl:ENSPTRG00000013161
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    syntenin-2
    Orthologs
    NEW
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    Genomic context

    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 21 NC_072419.2 (7986553..8006251, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 20 NC_072418.1 (2631834..2651542)

    Chromosome 21 - NC_072419.2Genomic Context describing neighboring genes Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene syntaphilin Neighboring gene uncharacterized LOC104003489 Neighboring gene uncharacterized LOC134809198 Neighboring gene FKBP prolyl isomerase 1A

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    syntenin-2
    Names
    syndecan binding protein (syntenin) 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001280008.1NP_001266937.1  syntenin-2

      See identical proteins and their annotated locations for NP_001266937.1

      Status: PROVISIONAL

      Source sequence(s)
      AK306699
      UniProtKB/TrEMBL
      G2HIY5
      Related
      ENSPTRP00000070017.1, ENSPTRT00000095733.1
      Conserved Domains (2) summary
      cd00136
      Location:117185
      PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
      cd00992
      Location:191264
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072419.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      7986553..8006251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016937212.3XP_016792701.2  syntenin-2 isoform X1

    2. XM_016937215.2XP_016792704.2  syntenin-2 isoform X1

    3. XM_016937214.3XP_016792703.2  syntenin-2 isoform X1