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    Khdc1 KH domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689090, updated on 29-Feb-2024

    Summary

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    Official Symbol
    Khdc1provided by RGD
    Official Full Name
    KH domain containing 1provided by RGD
    Primary source
    RGD:1597396
    See related
    AllianceGenome:RGD:1597396
    Gene type
    pseudo
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Khdc1c
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in activation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to be active in cytoplasm. Orthologous to several human genes including KHDC1 (KH domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Khdc1 in Genome Data Viewer
    Location:
    9q13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (31309032..31311266)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (23812442..23814932)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (27546069..27547769)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene ERH, mRNA splicing and mitosis factor, pseudogene 1 Neighboring gene glutathione S-transferase alpha 6 Neighboring gene Wistar clone pR53P1 p53 pseudogene Neighboring gene KH domain containing 1B Neighboring gene potassium voltage-gated channel subfamily Q member 5 Neighboring gene uncharacterized LOC134480561 Neighboring gene ferritin light chain 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • KH domain containing 1C
    • KH homology domain containing 1
    • KH homology domain-containing protein 1A-like

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in activation of cysteine-type endopeptidase activity involved in apoptotic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      31309032..31311266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_005489535.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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