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    lsamp limbic system associated membrane protein [ Danio rerio (zebrafish) ]

    Gene ID: 664692, updated on 27-Mar-2024

    Summary

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    Official Symbol
    lsampprovided by ZNC
    Official Full Name
    limbic system associated membrane proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090108-1
    See related
    AllianceGenome:ZFIN:ZDB-GENE-090108-1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    lamp
    Summary
    Orthologous to human LSAMP (limbic system associated membrane protein). [provided by Alliance of Genome Resources, Apr 2022]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 15
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (47180568..47238109, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003337230.1 (18652..31658, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 2A Neighboring gene growth associated protein 43 Neighboring gene anaphase promoting complex subunit 15 Neighboring gene folate receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Transcriptional regulatory regions of gap43 needed in developing and regenerating retinal ganglion cells. Kusik BW, et al. Dev Dyn, 2010 Feb. PMID 20034105, Free PMC Article
    2. B cells in teleost fish act as pivotal initiating APCs in priming adaptive immunity: an evolutionary perspective on the origin of the B-1 cell subset and B7 molecules. Zhu LY, et al. J Immunol, 2014 Mar 15. PMID 24532580
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    limbic system-associated membrane protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039832.1 → NP_001034921.1  limbic system-associated membrane protein precursor

      See identical proteins and their annotated locations for NP_001034921.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ381148
      UniProtKB/TrEMBL
      Q2EGT7
      Conserved Domains (5) summary
      cd00096
      Location:231 → 298
      Ig; Immunoglobulin domain
      smart00408
      Location:141 → 199
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:36 → 124
      IG_like; Immunoglobulin like
      pfam07679
      Location:213 → 300
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:34 → 124
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      47180568..47238109 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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