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    SAMM50 SAMM50 sorting and assembly machinery component [ Bos taurus (cattle) ]

    Gene ID: 618777, updated on 13-Apr-2024

    Summary

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    Official Symbol
    SAMM50provided by VGNC
    Official Full Name
    SAMM50 sorting and assembly machinery componentprovided by VGNC
    Primary source
    VGNC:VGNC:34278
    See related
    Ensembl:ENSBTAG00000045957
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (114695055..114725673)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene patatin like phospholipase domain containing 3 Neighboring gene patatin-like phospholipase domain containing 3 Neighboring gene parvin beta Neighboring gene microRNA mir-11985 Neighboring gene parvin gamma

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137813

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrial respiratory chain complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein insertion into mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAM complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting and assembly machinery component 50 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046623.1 → NP_001040088.1  sorting and assembly machinery component 50 homolog

      See identical proteins and their annotated locations for NP_001040088.1

      Status: PROVISIONAL

      Source sequence(s)
      BC113305
      UniProtKB/Swiss-Prot
      Q2HJ55
      UniProtKB/TrEMBL
      A0A3Q1MMP2
      Related
      ENSBTAP00000055147.2, ENSBTAT00000063243.2
      Conserved Domains (2) summary
      pfam01103
      Location:151 → 468
      Bac_surface_Ag; Surface antigen
      pfam07244
      Location:45 → 124
      POTRA; Surface antigen variable number repeat

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      114695055..114725673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886764.1 → XP_059742747.1  sorting and assembly machinery component 50 homolog isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2HJ55.1 GenPept UniProtKB/Swiss-Prot:Q2HJ55

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.