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    NUP88 nucleoporin 88 [ Canis lupus familiaris (dog) ]

    Gene ID: 607268, updated on 5-Mar-2024

    Summary

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    Official Symbol
    NUP88provided by VGNC
    Official Full Name
    nucleoporin 88provided by VGNC
    Primary source
    VGNC:VGNC:44061
    See related
    Ensembl:ENSCAFG00845002930
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (31470884..31494391)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (31504257..31527770)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (31571764..31595274)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (31436436..31459958)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (31395325..31418834)

    Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene complement C1q binding protein Neighboring gene RPA interacting protein Neighboring gene rabaptin, RAB GTPase binding effector protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene ZFP3 zinc finger protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein Nup88

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051809.1 Reference ROS_Cfam_1.0

      Range
      31470884..31494391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038665199.1 → XP_038521127.1  nuclear pore complex protein Nup88 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P0F8
      Conserved Domains (1) summary
      pfam10168
      Location:14 → 765
      Nup88; Nuclear pore component

    2. XM_038665200.1 → XP_038521128.1  nuclear pore complex protein Nup88 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KVF1, A0A8C0P0F8, A0A8C0PPE9, A0A8I3RSI7
      Related
      ENSCAFP00845004125.1, ENSCAFT00845005193.1
      Conserved Domains (1) summary
      pfam10168
      Location:14 → 738
      Nup88; Nuclear pore component

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049265.1 Alternate UMICH_Zoey_3.1

      Range
      31436436..31459958
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038475305.1 → XP_038331233.1  nuclear pore complex protein Nup88 isoform X1

      Conserved Domains (1) summary
      pfam10168
      Location:14 → 765
      Nup88; Nuclear pore component

    2. XM_038475306.1 → XP_038331234.1  nuclear pore complex protein Nup88 isoform X2

      Conserved Domains (1) summary
      pfam10168
      Location:14 → 738
      Nup88; Nuclear pore component

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

      Range
      31395325..31418834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038600674.1 → XP_038456602.1  nuclear pore complex protein Nup88 isoform X1

      Conserved Domains (1) summary
      pfam10168
      Location:14 → 765
      Nup88; Nuclear pore component

    2. XM_038600675.1 → XP_038456603.1  nuclear pore complex protein Nup88 isoform X2

      Conserved Domains (1) summary
      pfam10168
      Location:14 → 738
      Nup88; Nuclear pore component

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

      Range
      31571764..31595274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038536475.1 → XP_038392403.1  nuclear pore complex protein Nup88 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P0F8
      Conserved Domains (1) summary
      pfam10168
      Location:14 → 765
      Nup88; Nuclear pore component

    2. XM_038536476.1 → XP_038392404.1  nuclear pore complex protein Nup88 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KVF1, A0A8C0P0F8, A0A8C0PPE9, A0A8I3RSI7
      Conserved Domains (1) summary
      pfam10168
      Location:14 → 738
      Nup88; Nuclear pore component

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      31504257..31527770
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038513487.1 → XP_038369415.1  nuclear pore complex protein Nup88 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P0F8
      Conserved Domains (1) summary
      pfam10168
      Location:14 → 765
      Nup88; Nuclear pore component

    2. XM_843884.7 → XP_848977.3  nuclear pore complex protein Nup88 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KVF1, A0A8C0P0F8, A0A8C0PPE9, A0A8I3RSI7
      Conserved Domains (1) summary
      pfam10168
      Location:14 → 738
      Nup88; Nuclear pore component
    Nucleotide Protein
    Heading Accession and Version

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