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    elavl3 ELAV like neuron-specific RNA binding protein 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 594912, updated on 5-Mar-2024

    Summary

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    Official Symbol
    elavl3provided by Xenbase
    Official Full Name
    ELAV like neuron-specific RNA binding protein 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-490864
    See related
    Ensembl:ENSXETG00000016741
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    huc; elrC; hucl; ple21
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (139217828..139251163, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (128354708..128385961, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene outer dynein arm docking complex subunit 3 Neighboring gene PRKCSH beta subunit of glucosidase II Neighboring gene zinc finger protein 653 Neighboring gene ECSIT signalling integrator

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ELAV-like protein 3
    Names
    ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030326.2 → NP_001025497.1  ELAV-like protein 3

      See identical proteins and their annotated locations for NP_001025497.1

      Status: PROVISIONAL

      Source sequence(s)
      CR761704
      UniProtKB/Swiss-Prot
      A4IIS4, Q28FX0
      UniProtKB/TrEMBL
      F6XYR7
      Related
      ENSXETP00000066033.2, ENSXETT00000087961.2
      Conserved Domains (1) summary
      TIGR01661
      Location:32 → 342
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      139217828..139251163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012953162.3 → XP_012808616.1  ELAV-like protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A8J0S9Y8, F6TG58
      Conserved Domains (4) summary
      cd12650
      Location:33 → 110
      RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
      cd12655
      Location:278 → 362
      RRM3_HuC; RNA recognition motif 3 in vertebrate Hu-antigen C (HuC)
      TIGR01661
      Location:31 → 361
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cl17169
      Location:115 → 205
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_012953163.3 → XP_012808617.1  ELAV-like protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A803K119, F6TG58
      Related
      ENSXETP00000114019.1, ENSXETT00000120032.1
      Conserved Domains (4) summary
      cd12650
      Location:34 → 111
      RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
      cd12655
      Location:272 → 356
      RRM3_HuC; RNA recognition motif 3 in vertebrate Hu-antigen C (HuC)
      TIGR01661
      Location:32 → 355
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cl17169
      Location:116 → 206
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_012953160.3 → XP_012808614.1  ELAV-like protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8J0SBJ0, F6TG58
      Conserved Domains (4) summary
      cd12650
      Location:34 → 111
      RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
      cd12655
      Location:279 → 363
      RRM3_HuC; RNA recognition motif 3 in vertebrate Hu-antigen C (HuC)
      TIGR01661
      Location:32 → 362
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cl17169
      Location:116 → 206
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_018092117.2 → XP_017947606.1  ELAV-like protein 3 isoform X7

      UniProtKB/TrEMBL
      A0A8J0T129, F6TG58
      Conserved Domains (1) summary
      TIGR01661
      Location:32 → 348
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    5. XM_012953164.3 → XP_012808618.1  ELAV-like protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A8J0SC90, F6TG58
      Conserved Domains (1) summary
      TIGR01661
      Location:32 → 354
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    6. XM_012953161.3 → XP_012808615.1  ELAV-like protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8J0SCL0, F6TG58
      Related
      ENSXETP00000036509.5, ENSXETT00000036509.5
      Conserved Domains (1) summary
      TIGR01661
      Location:32 → 361
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    7. XM_012953165.3 → XP_012808619.1  ELAV-like protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A8J0SBJ5, F6TG58
      Conserved Domains (1) summary
      TIGR01661
      Location:32 → 349
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    8. XM_012953167.3 → XP_012808621.1  ELAV-like protein 3 isoform X8

      See identical proteins and their annotated locations for XP_012808621.1

      UniProtKB/TrEMBL
      F6XYR7
      Conserved Domains (1) summary
      TIGR01661
      Location:32 → 341
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    RNA

    1. XR_004221853.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q28FX0.1 GenPept UniProtKB/Swiss-Prot:Q28FX0

    Gene LinkOut

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