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    LOC568792 A disintegrin and metalloproteinase with thrombospondin motifs 16 [ Danio rerio (zebrafish) ]

    Gene ID: 568792, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC568792
    Gene description
    A disintegrin and metalloproteinase with thrombospondin motifs 16
    See related
    Ensembl:ENSDARG00000074646
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    adamts16
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 16
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (1100524..1177000)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (1073587..1149389)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene iroquois homeobox 2a Neighboring gene iroquois homeobox 1a Neighboring gene regulation of nuclear pre-mRNA domain containing 2b Neighboring gene threonyl-tRNA synthetase 2, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    A disintegrin and metalloproteinase with thrombospondin motifs 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      1100524..1177000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001922411.7 → XP_001922446.3  A disintegrin and metalloproteinase with thrombospondin motifs 16

      UniProtKB/TrEMBL
      A0A8M1QR32, E7FFX0
      Related
      ENSDARP00000087089.6, ENSDART00000092657.6
      Conserved Domains (6) summary
      smart00209
      Location:1133 → 1181
      TSP1; Thrombospondin type 1 repeats
      cd04273
      Location:309 → 510
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam01421
      Location:311 → 514
      Reprolysin; Reprolysin (M12B) family zinc metalloprotease
      pfam01562
      Location:86 → 203
      Pep_M12B_propep; Reprolysin family propeptide
      pfam05986
      Location:765 → 876
      ADAM_spacer1; ADAM-TS Spacer 1
      pfam08686
      Location:1190 → 1220
      PLAC; PLAC (protease and lacunin) domain
    Nucleotide Protein Strain
    Heading Accession and Version

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