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    LOC568645 probable polypeptide N-acetylgalactosaminyltransferase 8 [ Danio rerio (zebrafish) ]

    Gene ID: 568645, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC568645
    Gene description
    probable polypeptide N-acetylgalactosaminyltransferase 8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 25
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (16756233..16769712, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (16659833..16673312, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 1 Neighboring gene RIB43A domain with coiled-coils 2 Neighboring gene NADH:ubiquinone oxidoreductase subunit A9a Neighboring gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable polypeptide N-acetylgalactosaminyltransferase 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      16756233..16769712 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_691987.2 → XP_697079.2  probable polypeptide N-acetylgalactosaminyltransferase 8

      UniProtKB/TrEMBL
      A0A8N7UVK9
      Conserved Domains (3) summary
      cd02510
      Location:146 → 447
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      COG0463
      Location:141 → 330
      WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
      cd00161
      Location:460 → 552
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    Nucleotide Protein Strain
    Heading Accession and Version

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