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    ift57 intraflagellar transport 57 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549315, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ift57provided by Xenbase
    Official Full Name
    intraflagellar transport 57provided by Xenbase
    Primary source
    Xenbase:XB-GENE-999089
    See related
    Ensembl:ENSXETG00000026185
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    hippi; mhs4r2; esrrbl1
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (103603348..103613129, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (99991807..100001819, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene bobby sox homolog Neighboring gene HHLA2 member of B7 family Neighboring gene myosin heavy chain 15 Neighboring gene cellular inhibitor of PP2A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    intraflagellar transport protein 57 homolog
    Names
    estrogen-related receptor beta like 1
    intraflagellar transport 57 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016561.2 → NP_001016561.1  intraflagellar transport protein 57 homolog

      See identical proteins and their annotated locations for NP_001016561.1

      Status: PROVISIONAL

      Source sequence(s)
      CR760693
      UniProtKB/TrEMBL
      B7ZSZ1
      Conserved Domains (1) summary
      pfam10498
      Location:13 → 359
      IFT57; Intra-flagellar transport protein 57

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      103603348..103613129 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956983.3 → XP_012812437.1  intraflagellar transport protein 57 homolog isoform X1

      See identical proteins and their annotated locations for XP_012812437.1

      UniProtKB/Swiss-Prot
      Q28HX4
      Related
      ENSXETP00000055345.2, ENSXETT00000055345.4
      Conserved Domains (1) summary
      pfam10498
      Location:37 → 383
      IFT57; Intra-flagellar transport protein 57

    2. XM_012956984.3 → XP_012812438.1  intraflagellar transport protein 57 homolog isoform X1

      See identical proteins and their annotated locations for XP_012812438.1

      UniProtKB/Swiss-Prot
      Q28HX4
      Conserved Domains (1) summary
      pfam10498
      Location:37 → 383
      IFT57; Intra-flagellar transport protein 57

    3. XM_018091264.2 → XP_017946753.1  intraflagellar transport protein 57 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q28HX4
      Conserved Domains (1) summary
      pfam10498
      Location:37 → 383
      IFT57; Intra-flagellar transport protein 57
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q28HX4.1 GenPept UniProtKB/Swiss-Prot:Q28HX4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.