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    sh3glb2 SH3 domain containing GRB2 like, endophilin B2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548519, updated on 5-Mar-2024

    Summary

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    Official Symbol
    sh3glb2provided by Xenbase
    Official Full Name
    SH3 domain containing GRB2 like, endophilin B2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-943848
    See related
    Ensembl:ENSXETG00000012895
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (22818409..22836071)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (4076786..4094602, complement)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene bublin coiled coil protein Neighboring gene prostaglandin E synthase 2 Neighboring gene nucleoporin 188kDa Neighboring gene dolichol kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC108465

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    endophilin-B2
    Names
    SH3-domain GRB2-like endophilin B2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015802.1 → NP_001015802.1  endophilin-B2

      See identical proteins and their annotated locations for NP_001015802.1

      Status: PROVISIONAL

      Source sequence(s)
      BC089758
      UniProtKB/TrEMBL
      A0A6I8SNI3, Q5FVV1
      Related
      ENSXETP00000096372.2, ENSXETT00000103846.2
      Conserved Domains (2) summary
      cd07617
      Location:21 → 278
      BAR_Endophilin_B2; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2
      cl17036
      Location:334 → 388
      SH3; Src Homology 3 domain superfamily

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      22818409..22836071
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012968335.3 → XP_012823789.1  endophilin-B2 isoform X1

      UniProtKB/TrEMBL
      A0A6I8QJ44
      Related
      ENSXETP00000072294.1, ENSXETT00000099087.2
      Conserved Domains (2) summary
      cd07617
      Location:21 → 282
      BAR_Endophilin_B2; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2
      cl17036
      Location:343 → 397
      SH3; Src Homology 3 domain superfamily

    2. XM_012968338.3 → XP_012823792.1  endophilin-B2 isoform X4

      UniProtKB/TrEMBL
      A0A8J0SVZ5
      Conserved Domains (2) summary
      cd07617
      Location:21 → 274
      BAR_Endophilin_B2; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2
      cl17036
      Location:335 → 389
      SH3; Src Homology 3 domain superfamily

    3. XM_012968337.3 → XP_012823791.1  endophilin-B2 isoform X3

      UniProtKB/TrEMBL
      A0A8J0SUL9
      Conserved Domains (2) summary
      cd07617
      Location:21 → 282
      BAR_Endophilin_B2; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2
      cl17036
      Location:338 → 392
      SH3; Src Homology 3 domain superfamily

    4. XM_012968336.3 → XP_012823790.1  endophilin-B2 isoform X2

      UniProtKB/TrEMBL
      A0A6I8RL75
      Related
      ENSXETP00000082783.1, ENSXETT00000086040.2
      Conserved Domains (2) summary
      cd07617
      Location:21 → 278
      BAR_Endophilin_B2; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2
      cl17036
      Location:339 → 393
      SH3; Src Homology 3 domain superfamily

    5. XM_012968339.3 → XP_012823793.1  endophilin-B2 isoform X5

      UniProtKB/TrEMBL
      F6XPR1
      Related
      ENSXETP00000028208.5, ENSXETT00000028208.5
      Conserved Domains (2) summary
      cd07617
      Location:21 → 270
      BAR_Endophilin_B2; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2
      cl17036
      Location:331 → 385
      SH3; Src Homology 3 domain superfamily

    6. XM_012968340.3 → XP_012823794.1  endophilin-B2 isoform X6

      UniProtKB/TrEMBL
      A0A6I8SDF3
      Related
      ENSXETP00000095075.1, ENSXETT00000089052.2
      Conserved Domains (2) summary
      cd07617
      Location:21 → 257
      BAR_Endophilin_B2; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2
      cl17036
      Location:318 → 372
      SH3; Src Homology 3 domain superfamily

    7. XM_012968341.3 → XP_012823795.1  endophilin-B2 isoform X7

      UniProtKB/TrEMBL
      A0A6I8S9Z9
      Related
      ENSXETP00000095144.1, ENSXETT00000096819.2
      Conserved Domains (2) summary
      cd07617
      Location:21 → 249
      BAR_Endophilin_B2; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2
      cl17036
      Location:310 → 364
      SH3; Src Homology 3 domain superfamily

    8. XM_012968342.3 → XP_012823796.1  endophilin-B2 isoform X8

      UniProtKB/TrEMBL
      A0A8J0SUM4
      Conserved Domains (2) summary
      cd07617
      Location:21 → 249
      BAR_Endophilin_B2; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2
      cl17036
      Location:305 → 359
      SH3; Src Homology 3 domain superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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