U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    e4f1 E4F transcription factor 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548399, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    e4f1provided by Xenbase
    Official Full Name
    E4F transcription factor 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-981732
    See related
    Ensembl:ENSXETG00000016091
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    e4f
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (19353716..19370025, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (13505375..13521669, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein Neighboring gene uncharacterized LOC116407683 Neighboring gene zinc finger DHHC-type containing 4 Neighboring gene phosphoglycolate phosphatase Neighboring gene BRICHOS domain containing 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC147041

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor E4F1
    NP_001072166.1
    XP_012825832.1
    XP_012825833.1
    XP_012825834.1
    XP_012825835.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078698.1 → NP_001072166.1  transcription factor E4F1

      See identical proteins and their annotated locations for NP_001072166.1

      Status: PROVISIONAL

      Source sequence(s)
      BC121560
      UniProtKB/TrEMBL
      Q0V9H4
      Conserved Domains (3) summary
      COG5189
      Location:200 → 262
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:213 → 233
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:253 → 277
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      19353716..19370025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012970379.3 → XP_012825833.1  transcription factor E4F1 isoform X2

      UniProtKB/TrEMBL
      A0A8J0SYM2, Q5EAM4
      Conserved Domains (4) summary
      COG5189
      Location:311 → 520
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:500 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12171
      Location:169 → 195
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
      pfam13465
      Location:540 → 564
      zf-H2C2_2; Zinc-finger double domain

    2. XM_012970378.3 → XP_012825832.1  transcription factor E4F1 isoform X1

      UniProtKB/TrEMBL
      F6TXW1, Q5EAM4
      Related
      ENSXETP00000035090.4, ENSXETT00000035090.5
      Conserved Domains (4) summary
      COG5189
      Location:488 → 550
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:501 → 521
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:198 → 220
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:541 → 565
      zf-H2C2_2; Zinc-finger double domain

    3. XM_012970380.3 → XP_012825834.1  transcription factor E4F1 isoform X3

      UniProtKB/TrEMBL
      A0A6I8SMJ0, Q5EAM4
      Related
      ENSXETP00000094399.1, ENSXETT00000101271.2
      Conserved Domains (4) summary
      COG5048
      Location:193 → 512
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:437 → 457
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12171
      Location:170 → 196
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
      pfam13465
      Location:477 → 501
      zf-H2C2_2; Zinc-finger double domain

    4. XM_012970381.3 → XP_012825835.1  transcription factor E4F1 isoform X4

      UniProtKB/TrEMBL
      A0A6I8PR22, Q5EAM4
      Related
      ENSXETP00000060164.2, ENSXETT00000066226.3
      Conserved Domains (3) summary
      COG5189
      Location:361 → 423
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:374 → 394
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:414 → 438
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.