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    FAM171A1 family with sequence similarity 171 member A1 [ Bos taurus (cattle) ]

    Gene ID: 534850, updated on 5-Mar-2024

    Summary

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    Official Symbol
    FAM171A1provided by VGNC
    Official Full Name
    family with sequence similarity 171 member A1provided by VGNC
    Primary source
    VGNC:VGNC:28756
    See related
    Ensembl:ENSBTAG00000008787
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C13H10ORF38
    Orthologs
    human mouse all
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    Genomic context

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    See FAM171A1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (29781598..29913810, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene ribonuclease P/MRP subunit p38 Neighboring gene N-myristoyltransferase 2 Neighboring gene uncharacterized LOC132346853 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC159848

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in stress fiber assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAM171A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102180.1 → NP_001095650.1  protein FAM171A1 precursor

      See identical proteins and their annotated locations for NP_001095650.1

      Status: PROVISIONAL

      Source sequence(s)
      BC151293
      UniProtKB/TrEMBL
      A7MB22
      Related
      ENSBTAP00000068732.1, ENSBTAT00000070452.1
      Conserved Domains (1) summary
      pfam10577
      Location:34 → 836
      UPF0560; uncharacterized protein family UPF0560

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      29781598..29913810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025000718.2 → XP_024856486.1  protein FAM171A1 isoform X1

      UniProtKB/TrEMBL
      F1MJA5
      Related
      ENSBTAP00000032454.5, ENSBTAT00000032523.6
      Conserved Domains (1) summary
      pfam10577
      Location:34 → 895
      UPF0560; Uncharacterized protein family UPF0560

    2. XM_025000719.2 → XP_024856487.1  protein FAM171A1 isoform X2

      Conserved Domains (1) summary
      pfam10577
      Location:33 → 739
      UPF0560; Uncharacterized protein family UPF0560
    Nucleotide Protein Strain
    Heading Accession and Version

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