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    RNF144B ring finger protein 144B [ Bos taurus (cattle) ]

    Gene ID: 524166, updated on 3-Apr-2024

    Summary

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    Official Symbol
    RNF144Bprovided by VGNC
    Official Full Name
    ring finger protein 144Bprovided by VGNC
    Primary source
    VGNC:VGNC:34027
    See related
    BGD:BT27561; Ensembl:ENSBTAG00000009055
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 23
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (39178904..39338324, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343645 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC112443866 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene DEK proto-oncogene Neighboring gene lysine demethylase 1B Neighboring gene thiopurine S-methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC157214

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrial membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF144B
    Names
    ring finger 144B
    NP_001092498.1
    XP_059736335.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001099028.1 → NP_001092498.1  E3 ubiquitin-protein ligase RNF144B

      See identical proteins and their annotated locations for NP_001092498.1

      Status: PROVISIONAL

      Source sequence(s)
      BC142329
      UniProtKB/Swiss-Prot
      A5PK27
      UniProtKB/TrEMBL
      A0A3Q1MLH2
      Related
      ENSBTAP00000011931.4, ENSBTAT00000011931.5
      Conserved Domains (2) summary
      smart00647
      Location:102 → 167
      IBR; In Between Ring fingers
      pfam01485
      Location:186 → 226
      IBR; IBR domain, a half RING-finger domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      39178904..39338324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059880352.1 → XP_059736335.1  E3 ubiquitin-protein ligase RNF144B isoform X1

      UniProtKB/TrEMBL
      F1MXN0
      Related
      ENSBTAP00000071866.2, ENSBTAT00000074828.2
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5PK27.1 GenPept UniProtKB/Swiss-Prot:A5PK27

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