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    SRBD1 S1 RNA binding domain 1 [ Bos taurus (cattle) ]

    Gene ID: 513877, updated on 3-Apr-2024

    Summary

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    Official Symbol
    SRBD1provided by VGNC
    Official Full Name
    S1 RNA binding domain 1provided by VGNC
    Primary source
    VGNC:VGNC:35268
    See related
    BGD:BT30003; Ensembl:ENSBTAG00000007508
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (27806038..28050561, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like Neighboring gene DBIRD complex subunit ZNF326-like Neighboring gene FK506 binding protein 1A, 12kDa-like Neighboring gene protein kinase C epsilon Neighboring gene uncharacterized LOC132346563 Neighboring gene endothelial PAS domain protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleobase-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    S1 RNA-binding domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205772.2 → NP_001192701.1  S1 RNA-binding domain-containing protein 1

      See identical proteins and their annotated locations for NP_001192701.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000011
      UniProtKB/TrEMBL
      E1BIF3
      Conserved Domains (5) summary
      COG2183
      Location:206 → 987
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      cd05685
      Location:915 → 986
      S1_Tex; S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. ...
      pfam09371
      Location:215 → 410
      Tex_N; Tex-like protein N-terminal domain
      pfam12836
      Location:701 → 763
      HHH_3; Helix-hairpin-helix motif
      pfam16921
      Location:534 → 659
      Tex_YqgF; Tex protein YqgF-like domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      27806038..28050561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059891195.1 → XP_059747178.1  S1 RNA-binding domain-containing protein 1 isoform X4

      Related
      ENSBTAP00000009881.7, ENSBTAT00000009881.7

    2. XM_005212609.5 → XP_005212666.3  S1 RNA-binding domain-containing protein 1 isoform X2

      Related
      ENSBTAP00000056635.3, ENSBTAT00000066115.3

    3. XM_005212608.5 → XP_005212665.3  S1 RNA-binding domain-containing protein 1 isoform X1

      Related
      ENSBTAP00000077249.1, ENSBTAT00000110445.1

    4. XM_059891194.1 → XP_059747177.1  S1 RNA-binding domain-containing protein 1 isoform X3

      Related
      ENSBTAP00000102810.1, ENSBTAT00000128522.1

    RNA

    1. XR_009496281.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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