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    HMG20A high mobility group 20A [ Bos taurus (cattle) ]

    Gene ID: 513719, updated on 5-Mar-2024

    Summary

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    Official Symbol
    HMG20Aprovided by VGNC
    Official Full Name
    high mobility group 20Aprovided by VGNC
    Primary source
    VGNC:VGNC:29873
    See related
    BGD:BT22553; Ensembl:ENSBTAG00000020441
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 21
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (32554937..32632019)

    Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100847412 Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene ATP synthase subunit f, mitochondrial-like Neighboring gene uncharacterized LOC112443146 Neighboring gene leucine rich repeat and Ig domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC140640

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group protein 20A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075637.1 → NP_001069105.1  high mobility group protein 20A

      See identical proteins and their annotated locations for NP_001069105.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120108
      UniProtKB/TrEMBL
      Q0VCL5
      Related
      ENSBTAP00000027243.4, ENSBTAT00000027243.6
      Conserved Domains (2) summary
      cd01390
      Location:103 → 168
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam17380
      Location:64 → 313
      DUF5401; Family of unknown function (DUF5401)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      32554937..32632019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010817060.4 → XP_010815362.1  high mobility group protein 20A isoform X1

      See identical proteins and their annotated locations for XP_010815362.1

      UniProtKB/TrEMBL
      Q0VCL5
      Conserved Domains (2) summary
      cd01390
      Location:103 → 168
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
      pfam17380
      Location:64 → 313
      DUF5401; Family of unknown function (DUF5401)
    Nucleotide Protein Strain
    Heading Accession and Version

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