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    ZGPAT zinc finger CCCH-type and G-patch domain containing [ Bos taurus (cattle) ]

    Gene ID: 510866, updated on 4-Apr-2024

    Summary

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    Official Symbol
    ZGPATprovided by VGNC
    Official Full Name
    zinc finger CCCH-type and G-patch domain containingprovided by VGNC
    Primary source
    VGNC:VGNC:57036
    See related
    BGD:BT27640; Ensembl:ENSBTAG00000007498
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (54037421..54047311, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 46 Neighboring gene SLC2A4 regulator Neighboring gene Lck interacting transmembrane adaptor 1 Neighboring gene ADP ribosylation factor related protein 1 Neighboring gene TNF receptor superfamily member 6b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC140277

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH-type with G patch domain-containing protein
    Names
    zinc finger, CCCH-type with G patch domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024514.2 → NP_001019685.2  zinc finger CCCH-type with G patch domain-containing protein

      See identical proteins and their annotated locations for NP_001019685.2

      Status: VALIDATED

      Source sequence(s)
      BC118131, EH162907, EV732892
      UniProtKB/Swiss-Prot
      Q17QX2
      Related
      ENSBTAP00000042610.4, ENSBTAT00000045200.5
      Conserved Domains (4) summary
      smart00333
      Location:217 → 252
      TUDOR; Tudor domain
      smart00356
      Location:179 → 200
      ZnF_C3H1; zinc finger
      pfam01585
      Location:315 → 356
      G-patch; G-patch domain
      cl26593
      Location:440 → 503
      DUF2076; Uncharacterized protein conserved in bacteria (DUF2076)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      54037421..54047311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010811435.3 → XP_010809737.1  zinc finger CCCH-type with G patch domain-containing protein isoform X1

      See identical proteins and their annotated locations for XP_010809737.1

      UniProtKB/Swiss-Prot
      Q17QX2
      Conserved Domains (4) summary
      smart00333
      Location:217 → 252
      TUDOR; Tudor domain
      smart00356
      Location:179 → 200
      ZnF_C3H1; zinc finger
      pfam01585
      Location:315 → 356
      G-patch; G-patch domain
      cl26593
      Location:440 → 503
      DUF2076; Uncharacterized protein conserved in bacteria (DUF2076)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q17QX2.1 GenPept UniProtKB/Swiss-Prot:Q17QX2

    Gene LinkOut

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