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    PRRC2C proline rich coiled-coil 2C [ Bos taurus (cattle) ]

    Gene ID: 505359, updated on 5-Mar-2024

    Summary

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    Official Symbol
    PRRC2Cprovided by VGNC
    Official Full Name
    proline rich coiled-coil 2Cprovided by VGNC
    Primary source
    VGNC:VGNC:33406
    See related
    Ensembl:ENSBTAG00000001821
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    BAT2D1; BAT2L2
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 16
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (38985133..39080464)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107133234 Neighboring gene flavin containing dimethylaniline monoxygenase 4 Neighboring gene uncharacterized LOC101902371 Neighboring gene uncharacterized LOC104974427 Neighboring gene myocilin opposite strand Neighboring gene myocilin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Ishiwata H, et al. Mol Reprod Dev, 2003 May. PMID 12658628
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PRRC2C
    Names
    BAT2 domain containing 1
    HLA-B associated transcript 2-like 2

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206655.1 → NP_001193584.1  protein PRRC2C

      Status: VALIDATED

      Source sequence(s)
      BC105442, BP112949, DAAA02042881, DAAA02042882, DN283964, DV882453, DV885023, DV919530, EE361277, EH171408, EV658870
      UniProtKB/TrEMBL
      A0A3Q1M475, A0A3Q1MUN8
      Conserved Domains (2) summary
      pfam07001
      Location:1 → 162
      BAT2_N; BAT2 N-terminus
      pfam11914
      Location:1748 → 1842
      DUF3432; Domain of unknown function (DUF3432)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      38985133..39080464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024976108.2 → XP_024831876.1  protein PRRC2C isoform X7

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Related
      ENSBTAP00000099887.1, ENSBTAT00000115683.1
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 162
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:957 → 1174
      TOP2c; TopoisomeraseII
      cl26464
      Location:1732 → 1996
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1549 → 1845
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    2. XM_024976100.2 → XP_024831868.1  protein PRRC2C isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MUN8, G3X6B2
      Related
      ENSBTAP00000002380.6, ENSBTAT00000002380.7
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 162
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:957 → 1174
      TOP2c; TopoisomeraseII
      cl26464
      Location:1732 → 1996
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1549 → 1845
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    3. XM_024976111.2 → XP_024831879.1  protein PRRC2C isoform X10

      UniProtKB/TrEMBL
      A0A3Q1MUN8, G3X6B3
      Related
      ENSBTAP00000002381.6, ENSBTAT00000002381.7
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 162
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:957 → 1174
      TOP2c; TopoisomeraseII
      cl26464
      Location:1732 → 1996
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1549 → 1845
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    4. XM_024976109.2 → XP_024831877.1  protein PRRC2C isoform X8

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 162
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:957 → 1174
      TOP2c; TopoisomeraseII
      cl26464
      Location:1732 → 1996
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1549 → 1845
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    5. XM_024976113.2 → XP_024831881.1  protein PRRC2C isoform X12

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Related
      ENSBTAP00000058620.2, ENSBTAT00000080608.2
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 162
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:957 → 1174
      TOP2c; TopoisomeraseII
      cl26464
      Location:1732 → 1996
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1549 → 1845
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    6. XM_024976105.2 → XP_024831873.1  protein PRRC2C isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 162
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:957 → 1174
      TOP2c; TopoisomeraseII
      cl26464
      Location:1732 → 1996
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1549 → 1845
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    7. XM_024976101.2 → XP_024831869.1  protein PRRC2C isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 162
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:957 → 1174
      TOP2c; TopoisomeraseII
      cl26464
      Location:1732 → 1996
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1549 → 1845
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    8. XM_024976106.2 → XP_024831874.1  protein PRRC2C isoform X5

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 157
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:952 → 1169
      TOP2c; TopoisomeraseII
      cl26464
      Location:1727 → 1991
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1544 → 1840
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    9. XM_024976102.2 → XP_024831870.1  protein PRRC2C isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 160
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:955 → 1172
      TOP2c; TopoisomeraseII
      cl26464
      Location:1730 → 1994
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1547 → 1843
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    10. XM_024976107.2 → XP_024831875.1  protein PRRC2C isoform X6

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 160
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:955 → 1172
      TOP2c; TopoisomeraseII
      cl26464
      Location:1730 → 1994
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1547 → 1843
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    11. XM_024976110.2 → XP_024831878.1  protein PRRC2C isoform X9

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Related
      ENSBTAP00000063031.2, ENSBTAT00000083524.2
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 160
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:955 → 1172
      TOP2c; TopoisomeraseII
      cl26464
      Location:1730 → 1994
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1547 → 1843
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    12. XM_024976112.2 → XP_024831880.1  protein PRRC2C isoform X11

      UniProtKB/TrEMBL
      A0A3Q1MUN8
      Conserved Domains (4) summary
      pfam07001
      Location:1 → 162
      BAT2_N; BAT2 N-terminus
      cl25574
      Location:957 → 1174
      TOP2c; TopoisomeraseII
      cl26464
      Location:1732 → 1996
      Atrophin-1; Atrophin-1 family
      cl28033
      Location:1549 → 1845
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
    Nucleotide Protein Strain
    Heading Accession and Version

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