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    SIGLEC10 sialic acid binding Ig like lectin 10 [ Bos taurus (cattle) ]

    Gene ID: 504258, updated on 16-Jan-2024

    Summary

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    Gene symbol
    SIGLEC10
    Gene description
    sialic acid binding Ig like lectin 10
    See related
    BGD:BT10102; Ensembl:ENSBTAG00000008852
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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    Genomic context

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    Location:
    chromosome: 18
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (57462616..57470204, complement)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene chromosome 18 C19orf84 homolog Neighboring gene lens intrinsic membrane protein 2 Neighboring gene sialic acid-binding Ig-like lectin 8 Neighboring gene sialic acid-binding Ig-like lectin 5 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sialic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sialic acid-binding Ig-like lectin 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206277.1 → NP_001193206.1  sialic acid-binding Ig-like lectin 10 precursor

      See identical proteins and their annotated locations for NP_001193206.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000018
      UniProtKB/TrEMBL
      A0A3Q1N9R1, A0A3Q1NGX7
      Conserved Domains (4) summary
      smart00408
      Location:367 → 427
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:256 → 335
      IG_like; Immunoglobulin like
      pfam13895
      Location:261 → 335
      Ig_2; Immunoglobulin domain
      cl11960
      Location:20 → 137
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      57462616..57470204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010815285.4 → XP_010813587.1  sialic acid-binding Ig-like lectin 10 isoform X1

      See identical proteins and their annotated locations for XP_010813587.1

      UniProtKB/TrEMBL
      A0A3Q1NGX7
      Conserved Domains (4) summary
      smart00408
      Location:395 → 455
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:284 → 363
      IG_like; Immunoglobulin like
      pfam13895
      Location:289 → 363
      Ig_2; Immunoglobulin domain
      cl11960
      Location:20 → 137
      Ig; Immunoglobulin domain

    2. XM_010815284.4 → XP_010813586.1  sialic acid-binding Ig-like lectin 10 isoform X1

      See identical proteins and their annotated locations for XP_010813586.1

      UniProtKB/TrEMBL
      A0A3Q1NGX7
      Conserved Domains (4) summary
      smart00408
      Location:395 → 455
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:284 → 363
      IG_like; Immunoglobulin like
      pfam13895
      Location:289 → 363
      Ig_2; Immunoglobulin domain
      cl11960
      Location:20 → 137
      Ig; Immunoglobulin domain

    3. XM_005219533.5 → XP_005219590.1  sialic acid-binding Ig-like lectin 10 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1NGX7, E1BHM4
      Related
      ENSBTAP00000004195.5, ENSBTAT00000004195.6
      Conserved Domains (4) summary
      smart00408
      Location:367 → 427
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:256 → 335
      IG_like; Immunoglobulin like
      pfam13895
      Location:261 → 335
      Ig_2; Immunoglobulin domain
      cl11960
      Location:20 → 137
      Ig; Immunoglobulin domain

    4. XM_024978004.2 → XP_024833772.1  sialic acid-binding Ig-like lectin 10 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1NGX7
      Conserved Domains (2) summary
      smart00410
      Location:284 → 363
      IG_like; Immunoglobulin like
      cl11960
      Location:20 → 137
      Ig; Immunoglobulin domain

    5. XM_010815283.4 → XP_010813585.1  sialic acid-binding Ig-like lectin 10 isoform X1

      See identical proteins and their annotated locations for XP_010813585.1

      UniProtKB/TrEMBL
      A0A3Q1NGX7
      Related
      ENSBTAP00000071120.2, ENSBTAT00000068558.2
      Conserved Domains (4) summary
      smart00408
      Location:395 → 455
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:284 → 363
      IG_like; Immunoglobulin like
      pfam13895
      Location:289 → 363
      Ig_2; Immunoglobulin domain
      cl11960
      Location:20 → 137
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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