slc43a2b solute carrier family 43 member 2b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc43a2bprovided by ZNC
Official Full Name: solute carrier family 43 member 2bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041212-6
See related: Ensembl:ENSDARG00000061120 AllianceGenome:ZFIN:ZDB-GENE-041212-6
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb941; wu:fb37c04; wu:fb38e03; wu:fb52a10; wu:fi32b04; zgc:103664; xx:lithzf000079
Summary: Predicted to enable L-amino acid transmembrane transporter activity and neutral amino acid transmembrane transporter activity. Predicted to be involved in neutral amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; myotome; retinal inner nuclear layer; and yolk syncytial layer. Orthologous to human SLC43A2 (solute carrier family 43 member 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 10

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (24372886..24391884, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (24403435..24422434, complement)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa07h01.s1 (e-PCR)
- UniSTS:202248

fc73g02.x1 (e-PCR)
- UniSTS:188239

fi32b04.x1 (e-PCR)
- UniSTS:197276

fb38e03.x1 (e-PCR)
- UniSTS:203169

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables L-amino acid transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables neutral L-amino acid transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in neutral amino acid transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in basolateral plasma membrane	IEA Inferred from Electronic Annotation more info
located_in lateral plasma membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: large neutral amino acids transporter small subunit 4; solute carrier family 43 member 2b

Names: solute carrier family 43 (amino acid system L transporter), member 2b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001008585.1 → NP_001008585.1 solute carrier family 43 member 2b

See identical proteins and their annotated locations for NP_001008585.1

Status: PROVISIONAL

Source sequence(s)

BC086842

UniProtKB/TrEMBL

Q5PR35

Related

ENSDARP00000091545.5, ENSDART00000100772.5

Conserved Domains (1) summary

cd06174
Location:116 → 260

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007121.7 Reference GRCz11 Primary Assembly

Range

24372886..24391884 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009305270.3 → XP_009303545.1 large neutral amino acids transporter small subunit 4 isoform X1

UniProtKB/TrEMBL

A0A2R8QSV3, A0A8M3B653

Related

ENSDARP00000156564.1, ENSDART00000180013.1

Conserved Domains (1) summary

cd06174
Location:116 → 260

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...