dus4l dihydrouridine synthase 4-like [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: dus4lprovided by Xenbase
Official Full Name: dihydrouridine synthase 4-likeprovided by Xenbase
Primary source: Xenbase:XB-GENE-982821
See related: Ensembl:ENSXETG00000012196
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	3	NC_030679.2 (76465393..76483770, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	3	NC_030679.1 (66827841..66845222, complement)

Chromosome 3 - NC_030679.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables flavin adenine dinucleotide binding	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info
enables tRNA dihydrouridine synthase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within tRNA dihydrouridine synthesis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within tRNA processing	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like

NP_001007929.2

EC 1.3.1.-

EC 1.3.1.90

XP_017947534.1

EC 1.3.1.-

EC 1.3.1.90

XP_031753706.1

EC 1.3.1.-

EC 1.3.1.90

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001007928.1 → NP_001007929.2 tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like

Status: VALIDATED

Source sequence(s)

BC080375

UniProtKB/TrEMBL

A0A8J0T1H5, Q66KJ0

Conserved Domains (1) summary

cd02801
Location:27 → 254

DUS_like_FMN; Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also ...

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

76465393..76483770 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031897846.1 → XP_031753706.1 tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like isoform X1

UniProtKB/TrEMBL

F7EI29, Q28G52

Related

ENSXETP00000013032.5, ENSXETT00000013032.5

Conserved Domains (1) summary

cd02801
Location:36 → 263

DUS_like_FMN; Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also ...
XM_018092045.2 → XP_017947534.1 tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like isoform X2

UniProtKB/TrEMBL

A0A8J0T1H5, Q66KJ0

Conserved Domains (1) summary

cd02801
Location:27 → 254

DUS_like_FMN; Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also ...