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    xkrx XK related X-linked [ Danio rerio (zebrafish) ]

    Gene ID: 492765, updated on 27-Mar-2024

    Summary

    Official Symbol
    xkrxprovided by ZNC
    Official Full Name
    XK related X-linkedprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041114-108
    See related
    Ensembl:ENSDARG00000044011 AllianceGenome:ZFIN:ZDB-GENE-041114-108
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:101747
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in EVL; head mesenchyme; myotome; and somite. Orthologous to several human genes including XKRX (XK related X-linked). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (41318412..41340680)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (40951158..40973426)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 35 Neighboring gene ADP-ribosylation factor-like 13A Neighboring gene NADPH oxidase 1 Neighboring gene cleavage stimulation factor, 3' pre-RNA, subunit 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    XK-related protein 2
    Names
    XK, Kell blood group complex subunit-related, X-linked
    XK-related protein 2b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007406.1NP_001007407.1  XK-related protein 2

      See identical proteins and their annotated locations for NP_001007407.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085430
      UniProtKB/TrEMBL
      A0A0R4IEP2, F6P087, Q5U3R0
      Related
      ENSDARP00000064613.6, ENSDART00000064614.9
      Conserved Domains (1) summary
      pfam09815
      Location:43415
      XK-related; XK-related protein

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      41318412..41340680
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)