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    TGDS TDP-glucose 4,6-dehydratase [ Canis lupus familiaris (dog) ]

    Gene ID: 485521, updated on 5-Mar-2024

    Summary

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    Official Symbol
    TGDSprovided by VGNC
    Official Full Name
    TDP-glucose 4,6-dehydrataseprovided by VGNC
    Primary source
    VGNC:VGNC:47307
    See related
    Ensembl:ENSCAFG00845007622
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See TGDS in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 22 NC_051826.1 (45814910..45831319, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 22 NC_006604.4 (45170937..45186953, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 22 NC_049243.1 (45518896..45534916, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 22 NC_049282.1 (45468436..45484465, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 22 NC_049763.1 (45509305..45525339, complement)

    Chromosome 22 - NC_051826.1Genomic Context describing neighboring genes Neighboring gene dopachrome tautomerase Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene G protein-coupled receptor 180 Neighboring gene SRY-box transcription factor 21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dTDP-glucose 4,6-dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleotide-sugar metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dTDP-D-glucose 4,6-dehydratase
    XP_038287216.1
    XP_038362599.1
    XP_038425801.1
    XP_038489960.1
    XP_542640.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051826.1 Reference ROS_Cfam_1.0

      Range
      45814910..45831319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038431288.1 → XP_038287216.1  dTDP-D-glucose 4,6-dehydratase

      UniProtKB/TrEMBL
      A0A8C0LI19, A0A8C0NCJ2, A0A8I3MW29
      Related
      ENSCAFP00845010535.1, ENSCAFT00845013569.1
      Conserved Domains (1) summary
      cd05246
      Location:18 → 336
      dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049282.1 Alternate UMICH_Zoey_3.1

      Range
      45468436..45484465 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038506671.1 → XP_038362599.1  dTDP-D-glucose 4,6-dehydratase

      Conserved Domains (1) summary
      cd05246
      Location:18 → 336
      dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049763.1 Alternate UNSW_CanFamBas_1.0

      Range
      45509305..45525339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038634032.1 → XP_038489960.1  dTDP-D-glucose 4,6-dehydratase

      Conserved Domains (1) summary
      cd05246
      Location:18 → 336
      dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049243.1 Alternate UU_Cfam_GSD_1.0

      Range
      45518896..45534916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038569873.1 → XP_038425801.1  dTDP-D-glucose 4,6-dehydratase

      UniProtKB/TrEMBL
      A0A8C0LI19, A0A8C0NCJ2, A0A8I3MW29
      Conserved Domains (1) summary
      cd05246
      Location:18 → 336
      dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006604.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      45170937..45186953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_542640.7 → XP_542640.3  dTDP-D-glucose 4,6-dehydratase

      UniProtKB/TrEMBL
      A0A8C0LI19, A0A8C0NCJ2, A0A8I3MW29
      Conserved Domains (1) summary
      cd05246
      Location:18 → 336
      dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs
    Nucleotide Protein
    Heading Accession and Version

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