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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference ROS_Cfam_1.0
Genomic
-
NC_051816.1 Reference ROS_Cfam_1.0
- Range
-
63254885..63380812
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038684256.1 → XP_038540184.1 protein lin-28 homolog B isoform X1
- UniProtKB/TrEMBL
- A0A8C0R342, A0A8I3N5T6
- Related
- ENSCAFP00845010234.1, ENSCAFT00845013165.1
- Conserved Domains (2) summary
-
- PTZ00368
Location:127 → 184
- PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
- cd04458
Location:38 → 108
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038684259.1 → XP_038540187.1 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0R342, A0A8I3N0Q8
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038684258.1 → XP_038540186.1 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0R342, A0A8I3N0Q8
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038684260.1 → XP_038540188.1 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0R342, A0A8I3N0Q8
- Related
- ENSCAFP00845010261.1, ENSCAFT00845013204.1
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038684257.1 → XP_038540185.1 protein lin-28 homolog B isoform X2
- UniProtKB/TrEMBL
-
A0A8C0R342
- Conserved Domains (2) summary
-
- PTZ00368
Location:124 → 181
- PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
- cd04458
Location:35 → 105
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038684261.1 → XP_038540189.1 protein lin-28 homolog B isoform X4
- Conserved Domains (2) summary
-
- PTZ00368
Location:69 → 126
- PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
- cl09927
Location:12 → 51
- S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
Alternate UMICH_Zoey_3.1
Genomic
-
NC_049272.1 Alternate UMICH_Zoey_3.1
- Range
-
62610319..62736100
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038492514.1 → XP_038348442.1 protein lin-28 homolog B isoform X1
- Conserved Domains (2) summary
-
- COG5082
Location:109 → 193
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:38 → 108
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038492518.1 → XP_038348446.1 protein lin-28 homolog B isoform X3
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038492516.1 → XP_038348444.1 protein lin-28 homolog B isoform X3
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038492519.1 → XP_038348447.1 protein lin-28 homolog B isoform X3
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038492517.1 → XP_038348445.1 protein lin-28 homolog B isoform X3
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038492515.1 → XP_038348443.1 protein lin-28 homolog B isoform X2
-
XM_038492520.1 → XP_038348448.1 protein lin-28 homolog B isoform X4
- Conserved Domains (2) summary
-
- PTZ00368
Location:69 → 126
- PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
- cl09927
Location:12 → 51
- S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
Alternate UNSW_CanFamBas_1.0
Genomic
-
NC_049753.1 Alternate UNSW_CanFamBas_1.0
- Range
-
62451489..62577218
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038618695.1 → XP_038474623.1 protein lin-28 homolog B isoform X1
- Conserved Domains (2) summary
-
- COG5082
Location:109 → 193
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:38 → 108
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038618698.1 → XP_038474626.1 protein lin-28 homolog B isoform X3
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038618697.1 → XP_038474625.1 protein lin-28 homolog B isoform X3
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038618699.1 → XP_038474627.1 protein lin-28 homolog B isoform X3
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038618696.1 → XP_038474624.1 protein lin-28 homolog B isoform X2
-
XM_038618700.1 → XP_038474628.1 protein lin-28 homolog B isoform X4
- Conserved Domains (2) summary
-
- PTZ00368
Location:69 → 126
- PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
- cl09927
Location:12 → 51
- S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
Alternate UU_Cfam_GSD_1.0
Genomic
-
NC_049233.1 Alternate UU_Cfam_GSD_1.0
- Range
-
62730358..62855996
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038554818.1 → XP_038410746.1 protein lin-28 homolog B isoform X1
- UniProtKB/TrEMBL
- A0A8C0N694, A0A8C0R342, A0A8P0NVX6
- Conserved Domains (2) summary
-
- COG5082
Location:109 → 193
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:38 → 108
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038554822.1 → XP_038410750.1 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0KYS6, A0A8C0QAA4, A0A8C0R342, A0A8P0N6H1
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038554820.1 → XP_038410748.1 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0KYS6, A0A8C0QAA4, A0A8C0R342, A0A8P0N6H1
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038554823.1 → XP_038410751.1 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0KYS6, A0A8C0QAA4, A0A8C0R342, A0A8P0N6H1
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038554821.1 → XP_038410749.1 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0KYS6, A0A8C0QAA4, A0A8C0R342, A0A8P0N6H1
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038554819.1 → XP_038410747.1 protein lin-28 homolog B isoform X2
- UniProtKB/TrEMBL
-
A0A8C0R342
-
XM_038554824.1 → XP_038410752.1 protein lin-28 homolog B isoform X4
- Conserved Domains (2) summary
-
- PTZ00368
Location:69 → 126
- PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
- cl09927
Location:12 → 51
- S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
Alternate Dog10K_Boxer_Tasha Primary Assembly
Genomic
-
NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly
- Range
-
62192981..62315060
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_022426404.2 → XP_022282112.1 protein lin-28 homolog B isoform X1
- UniProtKB/TrEMBL
- A0A8C0N694, A0A8C0R342, A0A8P0NVX6
- Conserved Domains (2) summary
-
- COG5082
Location:109 → 193
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:38 → 108
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_038686874.1 → XP_038542802.1 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0KYS6, A0A8C0QAA4, A0A8C0R342, A0A8P0N6H1
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_539064.7 → XP_539064.2 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0KYS6, A0A8C0QAA4, A0A8C0R342, A0A8P0N6H1
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_022426407.2 → XP_022282115.1 protein lin-28 homolog B isoform X3
- UniProtKB/TrEMBL
- A0A8C0KYS6, A0A8C0QAA4, A0A8C0R342, A0A8P0N6H1
- Conserved Domains (2) summary
-
- COG5082
Location:101 → 185
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
- cd04458
Location:30 → 100
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
-
XM_022426405.2 → XP_022282113.1 protein lin-28 homolog B isoform X2
- UniProtKB/TrEMBL
-
A0A8C0R342
- Conserved Domains (2) summary
-
- cd04458
Location:35 → 105
- CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
- cl26705
Location:124 → 181
- AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
-
XM_038686893.1 → XP_038542821.1 protein lin-28 homolog B isoform X4
- Conserved Domains (2) summary
-
- PTZ00368
Location:69 → 126
- PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
- cl09927
Location:12 → 51
- S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...