U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    USP4 ubiquitin specific peptidase 4 [ Canis lupus familiaris (dog) ]

    Gene ID: 476624, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    USP4provided by VGNC
    Official Full Name
    ubiquitin specific peptidase 4provided by VGNC
    Primary source
    VGNC:VGNC:48195
    See related
    Ensembl:ENSCAFG00845027080
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See USP4 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (40256219..40309777)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (39818226..39871287)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (40306950..40360016)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (39623674..39676723)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (40027139..40080595)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111091331 Neighboring gene glutathione peroxidase 1 Neighboring gene chromosome 20 C3orf62 homolog Neighboring gene interactor of HORMAD1 1 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 4
    XP_003432923.1
    XP_005632597.1
    XP_038283680.1
    XP_038283681.1
    XP_038283682.1
    XP_038359364.1
    XP_038359365.1
    XP_038359366.1
    XP_038422367.1
    XP_038422368.1
    XP_038422369.1
    XP_038486515.1
    XP_038486516.1
    XP_038486517.1
    XP_533829.3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      40256219..40309777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038427752.1 → XP_038283680.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L8M6, A0A8C0L9Q6, A0A8C0NH91, A0A8I3PWL6, A0A8P0TQS0
      Related
      ENSCAFP00845037574.1, ENSCAFT00845047897.1
      Conserved Domains (1) summary
      COG5560
      Location:35 → 923
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    2. XM_038427753.1 → XP_038283681.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0L9Q6, A0A8C0NPQ3, A0A8C0R510, A0A8I3PV71, A0A8P0TQS0
      Related
      ENSCAFP00845037475.1, ENSCAFT00845047758.1
      Conserved Domains (1) summary
      COG5560
      Location:35 → 876
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    3. XM_038427754.1 → XP_038283682.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X3

      Conserved Domains (1) summary
      COG5560
      Location:35 → 563
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      39623674..39676723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038503436.1 → XP_038359364.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X1

      Conserved Domains (1) summary
      COG5560
      Location:35 → 923
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    2. XM_038503437.1 → XP_038359365.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X2

      Conserved Domains (1) summary
      COG5560
      Location:35 → 876
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    3. XM_038503438.1 → XP_038359366.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X3

      Conserved Domains (1) summary
      COG5560
      Location:35 → 563
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      40027139..40080595
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038630587.1 → XP_038486515.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X1

      Conserved Domains (1) summary
      COG5560
      Location:35 → 923
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    2. XM_038630588.1 → XP_038486516.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X2

      Conserved Domains (1) summary
      COG5560
      Location:35 → 876
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    3. XM_038630589.1 → XP_038486517.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X3

      Conserved Domains (1) summary
      COG5560
      Location:35 → 563
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      40306950..40360016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038566439.1 → XP_038422367.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L8M6, A0A8C0L9Q6, A0A8C0NH91, A0A8I3PWL6, A0A8P0TQS0
      Conserved Domains (1) summary
      COG5560
      Location:35 → 923
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    2. XM_038566440.1 → XP_038422368.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0L9Q6, A0A8C0NPQ3, A0A8C0R510, A0A8I3PV71, A0A8P0TQS0
      Conserved Domains (1) summary
      COG5560
      Location:35 → 876
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    3. XM_038566441.1 → XP_038422369.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X3

      Conserved Domains (1) summary
      COG5560
      Location:35 → 563
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      39818226..39871287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_533829.7 → XP_533829.3  ubiquitin carboxyl-terminal hydrolase 4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L8M6, A0A8C0L9Q6, A0A8C0NH91, A0A8I3PWL6, A0A8P0TQS0
      Conserved Domains (1) summary
      COG5560
      Location:35 → 923
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    2. XM_003432875.5 → XP_003432923.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0L9Q6, A0A8C0NPQ3, A0A8C0R510, A0A8I3PV71, A0A8P0TQS0
      Conserved Domains (1) summary
      COG5560
      Location:35 → 876
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

    3. XM_005632540.4 → XP_005632597.1  ubiquitin carboxyl-terminal hydrolase 4 isoform X3

      Conserved Domains (1) summary
      COG5560
      Location:35 → 563
      UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.