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    VPS51 VPS51 subunit of GARP complex [ Canis lupus familiaris (dog) ]

    Gene ID: 476028, updated on 5-Mar-2024

    Summary

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    Official Symbol
    VPS51provided by VGNC
    Official Full Name
    VPS51 subunit of GARP complexprovided by VGNC
    Primary source
    VGNC:VGNC:48295
    See related
    Ensembl:ENSCAFG00845026796
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    C18H11orf2
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 18
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (53125971..53147607, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (50691963..50714206, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (52589801..52611844, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (52221337..52242953, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (51795320..51816809, complement)

    Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene zinc finger HIT-type containing 2 Neighboring gene transmembrane 7 superfamily member 2 Neighboring gene transmembrane protein 262 Neighboring gene zinc finger protein like 1 Neighboring gene cell division cycle associated 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lysosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of EARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of GARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 51 homolog
    Names
    VPS51, GARP complex subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051822.1 Reference ROS_Cfam_1.0

      Range
      53125971..53147607 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038425038.1 → XP_038280966.1  vacuolar protein sorting-associated protein 51 homolog

      UniProtKB/TrEMBL
      A0A8C0MUA6, A0A8I3PT53, A0A8I3PU92, A0A8P0P844
      Related
      ENSCAFP00845037125.1, ENSCAFT00845047306.1
      Conserved Domains (2) summary
      pfam08700
      Location:62 → 146
      Vps51; Vps51/Vps67
      cl19297
      Location:102 → 263
      Dor1; Dor1-like family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049278.1 Alternate UMICH_Zoey_3.1

      Range
      52221337..52242953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038501302.1 → XP_038357230.1  vacuolar protein sorting-associated protein 51 homolog

      Conserved Domains (2) summary
      pfam08700
      Location:62 → 146
      Vps51; Vps51/Vps67
      cl19297
      Location:102 → 263
      Dor1; Dor1-like family

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

      Range
      51795320..51816809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038628109.1 → XP_038484037.1  vacuolar protein sorting-associated protein 51 homolog

      Conserved Domains (2) summary
      pfam08700
      Location:62 → 146
      Vps51; Vps51/Vps67
      cl19297
      Location:102 → 263
      Dor1; Dor1-like family

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

      Range
      52589801..52611844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038563979.1 → XP_038419907.1  vacuolar protein sorting-associated protein 51 homolog

      UniProtKB/TrEMBL
      A0A8C0MUA6, A0A8I3PT53, A0A8I3PU92, A0A8P0P844
      Conserved Domains (2) summary
      pfam08700
      Location:62 → 146
      Vps51; Vps51/Vps67
      cl19297
      Location:102 → 263
      Dor1; Dor1-like family

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      50691963..50714206 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_533237.7 → XP_533237.3  vacuolar protein sorting-associated protein 51 homolog

      UniProtKB/TrEMBL
      A0A8C0MUA6, A0A8I3PT53, A0A8I3PU92, A0A8P0P844
      Conserved Domains (2) summary
      pfam08700
      Location:62 → 146
      Vps51; Vps51/Vps67
      cl19297
      Location:102 → 263
      Dor1; Dor1-like family
    Nucleotide Protein
    Heading Accession and Version

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