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    LCA5L lebercilin LCA5 like [ Pan troglodytes (chimpanzee) ]

    Gene ID: 474116, updated on 13-Apr-2024

    Summary

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    Official Symbol
    LCA5Lprovided by VGNC
    Official Full Name
    lebercilin LCA5 likeprovided by VGNC
    Primary source
    VGNC:VGNC:10510
    Locus tag
    CK820_G0022818
    See related
    Ensembl:ENSPTRG00000013916
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 21
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 22 NC_072420.2 (40095728..40136015, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 21 NC_072419.1 (37748483..37788615, complement)

    Chromosome 22 - NC_072420.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC107970149 Neighboring gene high mobility group nucleosome binding domain 1 Neighboring gene uncharacterized LOC104002082 Neighboring gene guided entry of tail-anchored proteins factor 1 Neighboring gene myosin light polypeptide 6-like Neighboring gene SH3 domain binding glutamate rich protein Neighboring gene immunoglobulin superfamily member 5 Neighboring gene uncharacterized LOC112206653

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lebercilin-like protein
    Names
    LCA5L, lebercilin like
    Leber congenital amaurosis 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243973.4 → NP_001230902.4  lebercilin-like protein

      Status: INFERRED

      Source sequence(s)
      JAQQLN020000022
      Related
      ENSPTRP00000023948.3, ENSPTRT00000025954.3

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072420.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      40095728..40136015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009432237.5 → XP_009430512.4  lebercilin-like protein isoform X2

    2. XM_063803364.1 → XP_063659434.1  lebercilin-like protein isoform X2

    3. XM_016938400.4 → XP_016793889.3  lebercilin-like protein isoform X2

    4. XM_009431740.5 → XP_009430015.4  lebercilin-like protein isoform X2

    5. XM_063803365.1 → XP_063659435.1  lebercilin-like protein isoform X2

    6. XM_009428776.4 → XP_009427051.4  lebercilin-like protein isoform X1

    7. XM_063803370.1 → XP_063659440.1  lebercilin-like protein isoform X2

    8. XM_063803375.1 → XP_063659445.1  lebercilin-like protein isoform X2

    9. XM_063803373.1 → XP_063659443.1  lebercilin-like protein isoform X2

    10. XM_063803371.1 → XP_063659441.1  lebercilin-like protein isoform X2

    11. XM_009427458.4 → XP_009425733.4  lebercilin-like protein isoform X1

    12. XM_063803372.1 → XP_063659442.1  lebercilin-like protein isoform X2

    13. XM_063803376.1 → XP_063659446.1  lebercilin-like protein isoform X2

    14. XM_063803366.1 → XP_063659436.1  lebercilin-like protein isoform X2

    15. XM_063803377.1 → XP_063659447.1  lebercilin-like protein isoform X2

    16. XM_063803374.1 → XP_063659444.1  lebercilin-like protein isoform X2

    17. XM_063803369.1 → XP_063659439.1  lebercilin-like protein isoform X2

    18. XM_009428370.4 → XP_009426645.4  lebercilin-like protein isoform X1

    19. XM_063803368.1 → XP_063659438.1  lebercilin-like protein isoform X2

    20. XM_063803363.1 → XP_063659433.1  lebercilin-like protein isoform X1

    21. XM_009430262.4 → XP_009428537.4  lebercilin-like protein isoform X1

    22. XM_063803378.1 → XP_063659448.1  lebercilin-like protein isoform X2

    23. XM_063803367.1 → XP_063659437.1  lebercilin-like protein isoform X2

    Nucleotide Protein
    Heading Accession and Version

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