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    EVA1C eva-1 homolog C [ Pan troglodytes (chimpanzee) ]

    Gene ID: 473956, updated on 3-Apr-2024

    Summary

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    Gene symbol
    EVA1C
    Gene description
    eva-1 homolog C
    Locus tag
    CK820_G0022649
    See related
    Ensembl:ENSPTRG00000013854
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    FAM176C; C21orf63; C21H21orf63
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 22 NC_072420.2 (33121365..33223568)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 21 NC_072419.1 (30753794..30855997)

    Chromosome 22 - NC_072420.2Genomic Context describing neighboring genes Neighboring gene URB1 ribosome biogenesis homolog Neighboring gene melanocortin 2 receptor accessory protein Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene histone demethylase UTY-like Neighboring gene exosome complex component RRP40-like Neighboring gene t-complex 10 like Neighboring gene cilia and flagella associated protein 298

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DNA sequence and comparative analysis of chimpanzee chromosome 22. Watanabe H, et al. Nature, 2004 May 27. PMID 15164055

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein eva-1 homolog C
    Names
    family with sequence similarity 176, member C
    protein FAM176C
    uncharacterized protein C21orf63 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001071812.2 → NP_001065280.2  protein eva-1 homolog C precursor

      See identical proteins and their annotated locations for NP_001065280.2

      Status: PROVISIONAL

      Source sequence(s)
      AL954209
      UniProtKB/Swiss-Prot
      Q68US4, Q68US5
      UniProtKB/TrEMBL
      A0A2I3RBE2, A0A2J8M742, A0A2J8M744, A0A663DGB1, A0A6D2VWI7, K7A2Q8
      Related
      ENSPTRP00000061754.1, ENSPTRT00000080023.1
      Conserved Domains (2) summary
      pfam02140
      Location:75 → 158
      Gal_Lectin; Galactose binding lectin domain
      pfam14851
      Location:301 → 441
      FAM176; FAM176 family

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072420.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      33121365..33223568
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054675033.1 → XP_054531008.1  protein eva-1 homolog C isoform X1

    2. XM_054675035.1 → XP_054531010.1  protein eva-1 homolog C isoform X3

    3. XM_054675036.1 → XP_054531011.1  protein eva-1 homolog C isoform X5

    4. XM_054675037.1 → XP_054531012.1  protein eva-1 homolog C isoform X6

    5. XM_009458521.4 → XP_009456796.1  protein eva-1 homolog C isoform X4

      UniProtKB/TrEMBL
      A0A2I3RBE2, A0A2J8M744, A0A2J8M755, A0A2K6HIR8, A0A6D2VV25, A0A6D2VWI7
      Related
      ENSPTRP00000023845.3
      Conserved Domains (2) summary
      pfam02140
      Location:75 → 158
      Gal_Lectin; Galactose binding lectin domain
      pfam14851
      Location:298 → 438
      FAM176; FAM176 family

    6. XM_054675034.1 → XP_054531009.1  protein eva-1 homolog C isoform X2

    7. XM_054675040.1 → XP_054531015.1  protein eva-1 homolog C isoform X8

    8. XM_016938398.3 → XP_016793887.1  protein eva-1 homolog C isoform X9

    9. XM_054675038.1 → XP_054531013.1  protein eva-1 homolog C isoform X7

    10. XM_054675039.2 → XP_054531014.1  protein eva-1 homolog C isoform X7

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q68US5.1 GenPept UniProtKB/Swiss-Prot:Q68US5

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