U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SETD1A SET domain containing 1A, histone lysine methyltransferase [ Pan troglodytes (chimpanzee) ]

    Gene ID: 468101, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SETD1Aprovided by VGNC
    Official Full Name
    SET domain containing 1A, histone lysine methyltransferaseprovided by VGNC
    Primary source
    VGNC:VGNC:5916
    Locus tag
    CK820_G0050559
    See related
    Ensembl:ENSPTRG00000008024
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 16
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (34984747..35011712)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (34984684..35011608)

    Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene F-box and leucine rich repeat protein 19 Neighboring gene ORAI calcium release-activated calcium modulator 3 Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 Neighboring gene syntaxin 1B

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    histone-lysine N-methyltransferase SETD1A
    XP_001155055.3
    XP_016785210.2
    XP_016785211.2
    XP_016785212.2
    XP_016785213.2
    XP_016785215.2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      34984747..35011712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016929721.4 → XP_016785210.2  histone-lysine N-methyltransferase SETD1A isoform X1

      UniProtKB/TrEMBL
      K7CGR5

    2. XM_016929722.3 → XP_016785211.2  histone-lysine N-methyltransferase SETD1A isoform X1

      UniProtKB/TrEMBL
      K7CGR5

    3. XM_001155055.7 → XP_001155055.3  histone-lysine N-methyltransferase SETD1A isoform X1

      UniProtKB/TrEMBL
      K7CGR5

    4. XM_016929724.4 → XP_016785213.2  histone-lysine N-methyltransferase SETD1A isoform X1

      UniProtKB/TrEMBL
      K7CGR5

    5. XM_016929723.4 → XP_016785212.2  histone-lysine N-methyltransferase SETD1A isoform X1

      UniProtKB/TrEMBL
      K7CGR5

    6. XM_016929726.3 → XP_016785215.2  histone-lysine N-methyltransferase SETD1A isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous