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    RBCK1 RANBP2-type and C3HC4-type zinc finger containing 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 458025, updated on 3-Apr-2024

    Summary

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    Official Symbol
    RBCK1provided by VGNC
    Official Full Name
    RANBP2-type and C3HC4-type zinc finger containing 1provided by VGNC
    Primary source
    VGNC:VGNC:9966
    Locus tag
    CK820_G0017388
    See related
    Ensembl:ENSPTRG00000013144
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 20
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 21 NC_072419.2 (7137721..7160776)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 20 NC_072418.1 (3477318..3499752, complement)

    Chromosome 21 - NC_072419.2Genomic Context describing neighboring genes Neighboring gene neurensin 2 Neighboring gene tribbles pseudokinase 3 Neighboring gene uncharacterized LOC107969894 Neighboring gene TBC1 domain family member 20 Neighboring gene casein kinase 2 alpha 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein linear polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ranBP-type and C3HC4-type zinc finger-containing protein 1
    Names
    RanBP-type and C3HC4-type zinc finger containing 1
    XP_001152050.1
    XP_009434922.1
    XP_016792744.1
    XP_063658722.1
    XP_063658723.1
    XP_063658724.1
    XP_063658725.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072419.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      7137721..7160776
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001152050.8 → XP_001152050.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X2

      See identical proteins and their annotated locations for XP_001152050.1

      UniProtKB/TrEMBL
      A0A2I3S824, A0A2J8MRW2, A0A6D2WRN5, H2QJS6
      Related
      ENSPTRP00000022503.3
      Conserved Domains (5) summary
      cd01799
      Location:57 → 131
      Hoil1_N; Ubiquitin-like domain of HOIL1
      smart00547
      Location:197 → 217
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:197 → 216
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam01485
      Location:370 → 404
      IBR; IBR domain, a half RING-finger domain
      cd16633
      Location:278 → 332
      mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins

    2. XM_009436647.5 → XP_009434922.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A2I3S824
      Conserved Domains (5) summary
      cd01799
      Location:74 → 148
      Hoil1_N; Ubiquitin-like domain of HOIL1
      smart00547
      Location:214 → 234
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:214 → 233
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam01485
      Location:387 → 421
      IBR; IBR domain, a half RING-finger domain
      pfam13445
      Location:299 → 341
      zf-RING_UBOX; RING-type zinc-finger

    3. XM_063802654.1 → XP_063658724.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A2I3RTS8, A0A2J8MRW8, A0A6D2Y2H7

    4. XM_063802652.1 → XP_063658722.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X3

    5. XM_063802655.1 → XP_063658725.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A2I3RTS8, A0A2J8MRW8, A0A6D2Y2H7

    6. XM_063802653.1 → XP_063658723.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X3

    7. XM_016937255.4 → XP_016792744.1  ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A2I3T159, A0A2J8MS03, A0A6D2XZX0
      Related
      ENSPTRP00000082976.1

    RNA

    1. XR_010154124.1 RNA Sequence

    2. XR_010154125.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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