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    grtp1 growth hormone regulated TBC protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 448089, updated on 5-Mar-2024

    Summary

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    Official Symbol
    grtp1provided by Xenbase
    Official Full Name
    growth hormone regulated TBC protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-950226
    See related
    Ensembl:ENSXETG00000001972
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (115922536..115959960)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (112365990..112403037)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene DCN1, defective in cullin neddylation 1, domain containing 2 Neighboring gene ADP-ribosylhydrolase like 1 Neighboring gene lysosomal-associated membrane protein 1 Neighboring gene cullin 4A Neighboring gene PCI domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC69401

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables GTPase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in activation of GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    growth hormone-regulated TBC protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005632.1 → NP_001005632.1  growth hormone-regulated TBC protein 1

      See identical proteins and their annotated locations for NP_001005632.1

      Status: PROVISIONAL

      Source sequence(s)
      BC074617
      UniProtKB/Swiss-Prot
      Q6GL87
      UniProtKB/TrEMBL
      A0A6I8QDL7
      Related
      ENSXETP00000004220.3, ENSXETT00000004220.5
      Conserved Domains (1) summary
      smart00164
      Location:69 → 283
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      115922536..115959960
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956715.3 → XP_012812169.1  growth hormone-regulated TBC protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J0SE47
      Conserved Domains (1) summary
      smart00164
      Location:17 → 231
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6GL87.1 GenPept UniProtKB/Swiss-Prot:Q6GL87

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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