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    LOC4350098 60S ribosomal protein L10-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350098, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4350098
    Gene description
    60S ribosomal protein L10-1-like
    Locus tag
    OSNPB_110220800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SC34; OsJ_032053
    Expression
    Ubiquitous expression in flower buds (RPKM 177.8), leaves after flowering (RPKM 160.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (6321275..6323933)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276019 Neighboring gene uncharacterized LOC4350097 Neighboring gene auxin-responsive protein IAA27-like Neighboring gene putative auxin-responsive protein IAA29

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL16z; 60S ribosomal protein L10-1
    Names
    LOC_Os11g11390
    Protein QM
    Putative tumor suppressor SC34

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404458.1 → NP_001391387.1  large ribosomal subunit protein uL16z

      Status: VALIDATED

      Source sequence(s)
      CF277804, CF291286, CF335979, EG709623
      UniProtKB/Swiss-Prot
      A2ZCQ7, B7E5G0, P45635, Q0ITS8, Q2R8Q3, Q40650

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      6321275..6323933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761611.2 → XP_015617097.1  60S ribosomal protein L10-1

      UniProtKB/Swiss-Prot
      Q0ITS8
      Conserved Domains (1) summary
      PTZ00173
      Location:1 → 211
      PTZ00173; 60S ribosomal protein L10; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0ITS8.1 GenPept UniProtKB/Swiss-Prot:Q0ITS8

    Gene LinkOut

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    Research Materials