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    LOC4349131 DNA excision repair protein ERCC-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349131, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4349131
    Gene description
    DNA excision repair protein ERCC-1
    Locus tag
    OSNPB_100518900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 10.7), leaves after flowering (RPKM 10.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20070729..20074319, complement)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene protein HLB1 Neighboring gene germinal center kinase 1 Neighboring gene AAA-ATPase At2g46620 Neighboring gene molybdate-anion transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in UV-damage excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meiotic mismatch repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ERCC4-ERCC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nucleotide-excision repair factor 1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA excision repair protein ERCC-1
    Names
    Os10g0518900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20070729..20074319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757478.2 → XP_015612964.2  DNA excision repair protein ERCC-1

      UniProtKB/TrEMBL
      B8BHW4, B9G6M8
      Conserved Domains (2) summary
      COG0272
      Location:254 → 339
      Lig; NAD-dependent DNA ligase [Replication, recombination and repair]
      cl40440
      Location:146 → 273
      PDDEXK_nuclease-like; PDDEXK family nucleases
    Nucleotide Protein
    Heading Accession and Version

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