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    LOC4349087 actin-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349087, updated on 3-Apr-2024

    Summary

    Gene symbol
    LOC4349087
    Gene description
    actin-2
    Locus tag
    OSNPB_100510000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AC2; ACT2; RAC2; OsJ_030859
    Expression
    Biased expression in flowers (RPKM 178.4), flower buds (RPKM 114.2) and 3 other tissues See more
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    Genomic context

    See LOC4349087 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19606876..19610742)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene protein RESPONSE TO LOW SULFUR 3 Neighboring gene small nucleolar RNA snoR77 Neighboring gene uncharacterized LOC107276227 Neighboring gene uncharacterized LOC107276435

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    actin-2
    Names
    LOC_Os10g36650
    OSJNBa0005K07.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423082.1NP_001410011.1  actin-2

      Status: VALIDATED

      Source sequence(s)
      AK101613, CI259584, CI356783, CI566035
      UniProtKB/Swiss-Prot
      A0A0P0XW73, A3C6D7, P0C539, P17298, Q0IWG7, Q7XCZ1, Q94GX5

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      19606876..19610742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759418.2XP_015614904.1  actin-2

      UniProtKB/Swiss-Prot
      A3C6D7
      Conserved Domains (1) summary
      cl17037
      Location:5377
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily