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    LOC4347829 transmembrane 9 superfamily member 9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347829, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4347829
    Gene description
    transmembrane 9 superfamily member 9
    Locus tag
    OSNPB_090557800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 110.1), leaves after flowering (RPKM 100.4) and 6 other tissues See more
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    Genomic context

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    See LOC4347829 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22168447..22172430)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene probable purine permease 5 Neighboring gene cytochrome b561, DM13 and DOMON domain-containing protein At5g54830 Neighboring gene lamin-like protein Neighboring gene probable protein phosphatase 2C 70

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein localization to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane 9 superfamily member 9
    Names
    Os09g0557800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422943.1 → NP_001409872.1  transmembrane 9 superfamily member 9 precursor

      Status: VALIDATED

      Source sequence(s)
      AK121320, CI528437
      UniProtKB/TrEMBL
      B7F729, Q0IZP5

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22168447..22172430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756319.1 → XP_015611805.1  transmembrane 9 superfamily member 9

      UniProtKB/TrEMBL
      Q0IZP5
      Conserved Domains (1) summary
      pfam02990
      Location:65 → 603
      EMP70; Endomembrane protein 70
    Nucleotide Protein
    Heading Accession and Version

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