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    LOC4343440 syntaxin-132 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343440, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4343440
    Gene description
    syntaxin-132
    Locus tag
    OSNPB_070528900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 8.2) and mature seeds (RPKM 0.7) See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20686839..20691038)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At4g10955-like Neighboring gene GDSL esterase/lipase At4g10955 Neighboring gene isocitrate lyase-like Neighboring gene putative nuclease HARBI1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin-132
    Names
    OSJNBa0007H12.38
    Os07g0528900
    putative syntaxin-related protein(knolle)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20686839..20691038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789457.2 → XP_015644943.1  syntaxin-132 isoform X1

      UniProtKB/TrEMBL
      A3BKJ4
      Conserved Domains (3) summary
      cd00179
      Location:30 → 187
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
      cd15848
      Location:236 → 298
      SNARE_syntaxin1-like; SNARE motif of syntaxin 1 and related proteins
      pfam00804
      Location:30 → 272
      Syntaxin; Syntaxin

    2. XM_015789458.2 → XP_015644944.1  syntaxin-132 isoform X2

      UniProtKB/TrEMBL
      Q0D5X1
      Conserved Domains (2) summary
      pfam00804
      Location:30 → 235
      Syntaxin
      cl22856
      Location:203 → 269
      SNARE; SNARE motif
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases