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    LOC4341804 peptidyl-prolyl cis-trans isomerase CYP59 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341804, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341804
    Gene description
    peptidyl-prolyl cis-trans isomerase CYP59
    Locus tag
    OSNPB_060670500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0485A07.4
    Expression
    Ubiquitous expression in roots after flowering (RPKM 19.8), mature seeds (RPKM 18.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27792503..27798517)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene probable transcription factor KAN3 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP59 Neighboring gene uncharacterized LOC107276040 Neighboring gene U5 spliceosomal RNA Neighboring gene uncharacterized LOC112939430

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase CYP59
    Names
    Os06g0670500
    peptidylprolyl isomerase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27792503..27798517
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789057.2 → XP_015644543.1  peptidyl-prolyl cis-trans isomerase CYP59

      UniProtKB/TrEMBL
      A0A0P0X0B6, B8B172, Q0DA80, Q653M6
      Conserved Domains (4) summary
      COG0724
      Location:208 → 396
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      PRK12678
      Location:410 → 564
      PRK12678; transcription termination factor Rho; Provisional
      cd01921
      Location:4 → 169
      cyclophilin_RRM; cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the ...
      cd12235
      Location:239 → 321
      RRM_PPIL4; RNA recognition motif (RRM) found in peptidyl-prolyl cis-trans isomerase-like 4 (PPIase) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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