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    LOC4340586 DCN1-like protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340586, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4340586
    Gene description
    DCN1-like protein 2
    Locus tag
    OSNPB_060233400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 120.6), flowers (RPKM 83.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6928583..6932490, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4340584 Neighboring gene RING-H2 finger protein ATL46 Neighboring gene osmotin-like protein OSML13 Neighboring gene uncharacterized LOC107281206

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cullin family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein neddylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DCN1-like protein 2
    Names
    Os06g0233400
    P0479H10.34
    putative leucine zipper protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      6928583..6932490 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026487.1 → XP_025882272.1  DCN1-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A3B9Z7
      Conserved Domains (2) summary
      cd14350
      Location:12 → 51
      UBA_DCNL; UBA-like domain found in DCN1-like protein DCNL1, DCNL2 and similar proteins
      pfam03556
      Location:131 → 242
      Cullin_binding; Cullin binding

    2. XM_015788931.2 → XP_015644417.1  DCN1-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A2YB06, A3B9Z7, D3U2G0, Q0DDC7, Q67UK2
      Conserved Domains (2) summary
      cd14350
      Location:9 → 48
      UBA_DCNL; UBA-like domain found in DCN1-like protein DCNL1, DCNL2 and similar proteins
      pfam03556
      Location:128 → 239
      Cullin_binding; Cullin binding
    Nucleotide Protein
    Heading Accession and Version

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