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    LOC4338090 nudix hydrolase 15, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338090, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4338090
    Gene description
    nudix hydrolase 15, mitochondrial
    Locus tag
    OSNPB_050209400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 17.3), leaves after flowering (RPKM 13.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (6766472..6769110)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 Neighboring gene E3 ubiquitin-protein ligase EL5-like Neighboring gene uncharacterized LOC4338091 Neighboring gene GDSL esterase/lipase At5g45910

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetyl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables coenzyme A diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in coenzyme A catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nudix hydrolase 15, mitochondrial
    Names
    Os05g0209400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      6766472..6769110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782370.2 → XP_015637856.1  nudix hydrolase 15, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0WJC7, B8AZ64, B9FN29, Q75IK6
      Conserved Domains (1) summary
      cl00447
      Location:66 → 250
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
    Nucleotide Protein
    Heading Accession and Version

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