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    LOC4337299 repressor of RNA polymerase III transcription MAF1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337299, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4337299
    Gene description
    repressor of RNA polymerase III transcription MAF1 homolog
    Locus tag
    OSNPB_040662900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 17.0), flower buds (RPKM 15.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33828927..33832566, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene GTP cyclohydrolase 1 Neighboring gene protein RCC2 Neighboring gene protein IQ-DOMAIN 32 Neighboring gene zinc finger CCCH domain-containing protein 30-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase III core binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    repressor of RNA polymerase III transcription MAF1 homolog
    Names
    Os04g0662900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33828927..33832566 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780938.2 → XP_015636424.1  repressor of RNA polymerase III transcription MAF1 homolog

      UniProtKB/TrEMBL
      A0A0P0WFY6, Q01K35, Q7XM18
      Conserved Domains (1) summary
      pfam09174
      Location:26 → 192
      Maf1; Maf1 regulator

    2. XM_015780939.2 → XP_015636425.1  repressor of RNA polymerase III transcription MAF1 homolog

      UniProtKB/TrEMBL
      A0A0P0WFY6, Q01K35, Q7XM18
      Conserved Domains (1) summary
      pfam09174
      Location:26 → 192
      Maf1; Maf1 regulator
    Nucleotide Protein
    Heading Accession and Version

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