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    LOC4333113 mitochondrial import inner membrane translocase subunit TIM17-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333113, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4333113
    Gene description
    mitochondrial import inner membrane translocase subunit TIM17-1
    Locus tag
    OSNPB_030415500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 2.9), flower buds (RPKM 1.3) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17236501..17241081)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene PI-PLC X domain-containing protein At5g67130 Neighboring gene uncharacterized LOC107277202 Neighboring gene F-box/kelch-repeat protein At5g26960-like Neighboring gene uncharacterized LOC107280252 Neighboring gene COBRA-like protein 5 Neighboring gene COBRA-like protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TIM23 mitochondrial import inner membrane translocase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial import inner membrane translocase subunit TIM17-1
    Names
    Os03g0415500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17236501..17241081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023757.1 → XP_025879542.1  mitochondrial import inner membrane translocase subunit TIM17-1 isoform X1

      UniProtKB/TrEMBL
      A2XHZ4
      Conserved Domains (1) summary
      cl02381
      Location:6 → 141
      Tim17; Tim17/Tim22/Tim23/Pmp24 family

    2. XM_015773917.2 → XP_015629403.1  mitochondrial import inner membrane translocase subunit TIM17-1 isoform X2

      UniProtKB/TrEMBL
      A2XHZ4, Q0DR59, Q10JL7
      Conserved Domains (1) summary
      cl02381
      Location:6 → 141
      Tim17; Tim17/Tim22/Tim23/Pmp24 family

    3. XM_015773919.2 → XP_015629405.1  mitochondrial import inner membrane translocase subunit TIM17-1 isoform X3

      UniProtKB/TrEMBL
      A2XHZ4, Q10JL6, Q75IW7
      Conserved Domains (1) summary
      cl02381
      Location:6 → 141
      Tim17; Tim17/Tim22/Tim23/Pmp24 family
    Nucleotide Protein
    Heading Accession and Version

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