SDCBP syndecan binding protein [Gallus gallus (chicken)] - Gene

Summary

Symbol: SDCBPprovided by CGNC
Full Name: syndecan binding proteinprovided by CGNC
Primary source: CGNC:51422
See related: Ensembl:ENSGALG00010002916
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: syntenin-1
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	2	NC_052533.1 (111752562..111765146)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	2	NC_052574.1 (111759019..111771598)

Chromosome 2 - NC_052533.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables syndecan binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in positive regulation of transforming growth factor beta receptor signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: syntenin-1

Names: syndecan binding protein (syntenin)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001031024.2 → NP_001026195.1 syntenin-1

See identical proteins and their annotated locations for NP_001026195.1

Status: PROVISIONAL

Source sequence(s)

JAENSK010000043

UniProtKB/TrEMBL

A0A1D5PES5, A0A8V0XER1, Q5ZHM8

Related

ENSGALP00010004129.1, ENSGALT00010006775.1

Conserved Domains (1) summary

cd00992
Location:108 → 187

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

111752562..111765146

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040685448.2 → XP_040541382.1 syntenin-1 isoform X1

UniProtKB/TrEMBL

A0A1D5PES5, A0A8V0XER1, Q5ZHM8

Conserved Domains (1) summary

cd00992
Location:108 → 187

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_040685456.2 → XP_040541390.1 syntenin-1 isoform X1

UniProtKB/TrEMBL

A0A1D5PES5, A0A8V0XER1, Q5ZHM8

Related

ENSGALP00010004127.1, ENSGALT00010006773.1

Conserved Domains (1) summary

cd00992
Location:108 → 187

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
XM_015282672.4 → XP_015138158.1 syntenin-1 isoform X1

UniProtKB/TrEMBL

A0A1D5PES5, A0A8V0XER1, Q5ZHM8

Conserved Domains (1) summary

cd00992
Location:108 → 187

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...