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    nfrkb nuclear factor related to kappaB binding protein [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 394815, updated on 5-Mar-2024

    Summary

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    Official Symbol
    nfrkbprovided by Xenbase
    Official Full Name
    nuclear factor related to kappaB binding proteinprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-6258496
    See related
    Ensembl:ENSXETG00000004078
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ino80g
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (73050629..73096515, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (67409181..67433222, complement)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene posterior protein 6 Neighboring gene transmembrane protein 45B Neighboring gene uncharacterized LOC116412091 Neighboring gene nuclear factor related to kappa-B-binding protein-like Neighboring gene PR domain containing 10 Neighboring gene amyloid beta (A4) precursor-like protein 2 Neighboring gene uncharacterized LOC101734072

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC75871

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protease binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor related to kappa-B-binding protein
    Names
    DNA-binding protein R kappa-B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_203876.1 → NP_989207.1  nuclear factor related to kappa-B-binding protein

      See identical proteins and their annotated locations for NP_989207.1

      Status: PROVISIONAL

      Source sequence(s)
      BC063348
      UniProtKB/Swiss-Prot
      Q6P4L9
      Related
      ENSXETP00000063281.3, ENSXETT00000061158.3
      Conserved Domains (2) summary
      PHA03255
      Location:700 → 840
      PHA03255; BDLF3; Provisional
      pfam14465
      Location:380 → 477
      NFRKB_winged; NFRKB Winged Helix-like

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      73050629..73096515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031904947.1 → XP_031760807.1  nuclear factor related to kappa-B-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A6I8PSP8
      Conserved Domains (2) summary
      PHA03255
      Location:700 → 840
      PHA03255; BDLF3; Provisional
      pfam14465
      Location:380 → 479
      NFRKB_winged; NFRKB Winged Helix-like

    2. XM_031904944.1 → XP_031760804.1  nuclear factor related to kappa-B-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A6I8PSP8
      Conserved Domains (2) summary
      PHA03255
      Location:700 → 840
      PHA03255; BDLF3; Provisional
      pfam14465
      Location:380 → 479
      NFRKB_winged; NFRKB Winged Helix-like

    3. XM_031904943.1 → XP_031760803.1  nuclear factor related to kappa-B-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A6I8PSP8
      Conserved Domains (2) summary
      PHA03255
      Location:700 → 840
      PHA03255; BDLF3; Provisional
      pfam14465
      Location:380 → 479
      NFRKB_winged; NFRKB Winged Helix-like

    4. XM_031904945.1 → XP_031760805.1  nuclear factor related to kappa-B-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A6I8PSP8
      Conserved Domains (2) summary
      PHA03255
      Location:700 → 840
      PHA03255; BDLF3; Provisional
      pfam14465
      Location:380 → 479
      NFRKB_winged; NFRKB Winged Helix-like

    5. XM_031904946.1 → XP_031760806.1  nuclear factor related to kappa-B-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A6I8PSP8
      Conserved Domains (2) summary
      PHA03255
      Location:700 → 840
      PHA03255; BDLF3; Provisional
      pfam14465
      Location:380 → 479
      NFRKB_winged; NFRKB Winged Helix-like
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6P4L9.1 GenPept UniProtKB/Swiss-Prot:Q6P4L9

    Gene LinkOut

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