cstf3 cleavage stimulation factor, 3' pre-RNA, subunit 3 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: cstf3provided by Xenbase
Official Full Name: cleavage stimulation factor, 3' pre-RNA, subunit 3provided by Xenbase
Primary source: Xenbase:XB-GENE-980297
See related: Ensembl:ENSXETG00000041142
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 4

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	4	NC_030680.2 (18360171..18405789, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	4	NC_030680.1 (9173942..9211310, complement)

Chromosome 4 - NC_030680.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA 3'-end processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: cleavage stimulation factor, 3' pre-RNA, subunit 3

Names: cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_203831.1 → NP_989162.1 cleavage stimulation factor, 3' pre-RNA, subunit 3

See identical proteins and their annotated locations for NP_989162.1

Status: PROVISIONAL

Source sequence(s)

BC063376

UniProtKB/TrEMBL

A0A6I8QLH0, Q6P4J1

Related

ENSXETP00000069403.2, ENSXETT00000070399.2

Conserved Domains (4) summary

smart00386
Location:46 → 78

HAT; HAT (Half-A-TPR) repeats

COG5107
Location:8 → 533

RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

sd00006
Location:32 → 61

TPR; TPR repeat [structural motif]

pfam05843
Location:376 → 650

Suf; Suppressor of forked protein (Suf)