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    nt5c1a 5'-nucleotidase, cytosolic IA [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 394700, updated on 11-Nov-2023

    Summary

    Official Symbol
    nt5c1aprovided by Xenbase
    Official Full Name
    5'-nucleotidase, cytosolic IAprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-952062
    See related
    Ensembl:ENSXETG00000015581
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (142189344..142199761, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (137993185..138003603, complement)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel, modifier subfamily S, member 3 Neighboring gene retinol dehydrogenase 14 Neighboring gene odd-skipped related transcription factor 1 Neighboring gene extensin-like

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables 5'-nucleotidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within nucleotide metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cytosolic 5'-nucleotidase 1B
    NP_989096.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_203765.1NP_989096.1  cytosolic 5'-nucleotidase 1B

      See identical proteins and their annotated locations for NP_989096.1

      Status: PROVISIONAL

      Source sequence(s)
      BC062488
      UniProtKB/TrEMBL
      F6SFX2, Q6P646
      Related
      ENSXETP00000033985.3, ENSXETT00000033985.3
      Conserved Domains (1) summary
      pfam06189
      Location:84352
      5-nucleotidase; 5'-nucleotidase

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      142189344..142199761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)