U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Fam133b family with sequence similarity 133, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362320, updated on 13-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Fam133bprovided by RGD
    Official Full Name
    family with sequence similarity 133, member Bprovided by RGD
    Primary source
    RGD:1306302
    See related
    Ensembl:ENSRNOG00000009163 AllianceGenome:RGD:1306302
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306302
    Summary
    Orthologous to several human genes including FAM133B (family with sequence similarity 133 member B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Thymus (RPKM 110.5), Kidney (RPKM 85.9) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    4q13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (31544458..31571056, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (30589646..30616291, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (27728883..27755182, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700109H08 gene like Neighboring gene peroxisomal biogenesis factor 1 Neighboring gene RNA binding motif protein 48 Neighboring gene uncharacterized LOC134486561 Neighboring gene cyclin-dependent kinase 6 Neighboring gene uncharacterized LOC108350668

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein FAM133B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024799.2 → NP_001019970.1  protein FAM133B

      See identical proteins and their annotated locations for NP_001019970.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/Swiss-Prot
      Q505I5
      Related
      ENSRNOP00000012253.6, ENSRNOT00000012253.8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      31544458..31571056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107763.2 → XP_038963691.1  protein FAM133B isoform X2

      UniProtKB/TrEMBL
      A0A8I6ANF8
      Related
      ENSRNOP00000090523.1

    2. XM_063286234.1 → XP_063142304.1  protein FAM133B isoform X4

    3. XM_063286233.1 → XP_063142303.1  protein FAM133B isoform X3

      UniProtKB/TrEMBL
      A6K289

    4. XM_063286232.1 → XP_063142302.1  protein FAM133B isoform X1

    5. XM_039107767.2 → XP_038963695.1  protein FAM133B isoform X8

    6. XM_039107765.2 → XP_038963693.1  protein FAM133B isoform X6

    7. XM_039107766.2 → XP_038963694.1  protein FAM133B isoform X7

    8. XM_039107764.2 → XP_038963692.1  protein FAM133B isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q505I5.1 GenPept UniProtKB/Swiss-Prot:Q505I5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous