Rtbdn retbindin [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Rtbdnprovided by RGD
Official Full Name: retbindinprovided by RGD
Primary source: RGD:1308534
See related: Ensembl:ENSRNOG00000043215 AllianceGenome:RGD:1308534
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Rtbnd
Summary: Predicted to enable riboflavin binding activity; riboflavin transmembrane transporter activity; and signaling receptor activity. Predicted to be involved in riboflavin transport. Predicted to be located in interphotoreceptor matrix. Predicted to be extrinsic component of plasma membrane. Predicted to be anchored component of external side of plasma membrane. Orthologous to human RTBDN (retbindin). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Brain (RPKM 7.3), Lung (RPKM 4.2) and 5 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 19q11

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	19	NC_086037.1 (40102364..40112791, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	19	NC_051354.1 (23197506..23205544, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	19	NC_005118.4 (26065784..26073194)

Chromosome 19 - NC_086037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables riboflavin binding	IBA Inferred from Biological aspect of Ancestor more info
enables riboflavin binding	ISO Inferred from Sequence Orthology more info
enables riboflavin transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables signaling receptor activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in riboflavin transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in external side of plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in external side of plasma membrane	ISO Inferred from Sequence Orthology more info
located_in interphotoreceptor matrix	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: retbindin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.