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    K04F10.2 Protein KATNIP homolog [ Caenorhabditis elegans ]

    Gene ID: 187003, updated on 23-Nov-2023

    Summary

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    Gene symbol
    K04F10.2
    Gene description
    Protein KATNIP homolog
    Primary source
    WormBase:WBGene00019395
    Locus tag
    CELE_K04F10.2
    See related
    AllianceGenome:WB:WBGene00019395
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Acts upstream of or within motile cilium assembly. Located in ciliary base. Is expressed in intestinal cell and nervous system. Human ortholog(s) of this gene implicated in Joubert syndrome 26. Orthologous to human KATNIP (katanin interacting protein). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: I
    Exon count:
    10
    Sequence:
    Chromosome: I; NC_003279.8 (6360838..6364172)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Endoprotease bli-4 Neighboring gene PAP-associated domain-containing protein;Polymerase nucleotidyl transferase domain-containing protein Neighboring gene Vacuolar protein sorting-associated protein 28 homolog Neighboring gene AXH domain-containing protein Neighboring gene Protein FAM76A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. KIAA0556 is a novel ciliary basal body component mutated in Joubert syndrome. Sanders AA, et al. Genome Biol, 2015 Dec 29. PMID 26714646, Free PMC Article
    2. Shifted Transversal Design smart-pooling for high coverage interactome mapping. Xin X, et al. Genome Res, 2009 Jul. PMID 19447967, Free PMC Article
    3. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    acts_upstream_of_or_within motile cilium assembly IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ciliary base IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Protein KATNIP homolog
    NP_001362011.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      6360838..6364172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001374903.2 → NP_001362011.1  Protein KATNIP homolog [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O44770
      Conserved Domains (1) summary
      pfam14652
      Location:263 → 548
      DUF4457; Domain of unknown function (DUF4457)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O44770.3

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