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    F09E5.3 Putative deoxyribose-phosphate aldolase [ Caenorhabditis elegans ]

    Gene ID: 173911, updated on 23-Nov-2023

    Summary

    Gene symbol
    F09E5.3
    Gene description
    Putative deoxyribose-phosphate aldolase
    Primary source
    WormBase:WBGene00017283
    Locus tag
    CELE_F09E5.3
    See related
    AllianceGenome:WB:WBGene00017283
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable deoxyribose-phosphate aldolase activity. Predicted to be involved in carbohydrate catabolic process and deoxyribonucleotide catabolic process. Predicted to be located in cytoplasm. Is expressed in hypodermis and intestine. Orthologous to human DERA (deoxyribose-phosphate aldolase). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (5373997..5375177)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Exocyst complex component 3 Neighboring gene Uncharacterized protein Neighboring gene AlkylGuanine DNA alkylTransferase Neighboring gene Alpha-1,3/1,6-mannosyltransferase ALG2 Neighboring gene Peroxiredoxin prdx-2

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables deoxyribose-phosphate aldolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables deoxyribose-phosphate aldolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in carbohydrate catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in deoxyribonucleotide catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in deoxyribonucleotide catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in deoxyribose phosphate catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Putative deoxyribose-phosphate aldolase
    NP_495009.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      5373997..5375177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062608.8NP_495009.1  Putative deoxyribose-phosphate aldolase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495009.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q19264
      Conserved Domains (1) summary
      cd00959
      Location:61293
      DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family