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    fndc10 fibronectin type III domain containing 10 [ Danio rerio (zebrafish) ]

    Gene ID: 101885825, updated on 27-Mar-2024

    Summary

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    Official Symbol
    fndc10provided by ZNC
    Official Full Name
    fibronectin type III domain containing 10provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141216-142
    See related
    Ensembl:ENSDARG00000078657 AllianceGenome:ZFIN:ZDB-GENE-141216-142
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    c22h1orf233; si:zfos-1324h11.5
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FNDC10 (fibronectin type III domain containing 10). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (370949..372589, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (366303..367925, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 240b Neighboring gene SSU72 homolog, RNA polymerase II CTD phosphatase Neighboring gene olfactory receptor class A related 4 Neighboring gene olfactory receptor class A related 3, tandem duplicate 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    fibronectin type III domain-containing protein 10
    Names
    fibronectin type-III domain-containing transmembrane protein C1orf233 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      370949..372589 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005168283.4 → XP_005168340.1  fibronectin type III domain-containing protein 10

      UniProtKB/TrEMBL
      A0A0R4IYG0, A0A8M2BG78
      Related
      ENSDARP00000140918.1, ENSDART00000112895.3
    Nucleotide Protein
    Heading Accession and Version

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