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    hoxa11 homeobox A11 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 101733863, updated on 8-Mar-2024

    Summary

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    Official Symbol
    hoxa11provided by Xenbase
    Official Full Name
    homeobox A11provided by Xenbase
    Primary source
    Xenbase:XB-GENE-483242
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (42217553..42222386, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (32881187..32885885)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene homeobox A9 Neighboring gene microRNA mir-196b Neighboring gene homeobox A10 Neighboring gene homeobox A13 Neighboring gene even-skipped homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    homeobox protein Hox-A11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      42217553..42222386 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004915395.4 → XP_004915452.1  homeobox protein Hox-A11

      UniProtKB/TrEMBL
      A0A8J0R4C4
      Conserved Domains (2) summary
      pfam00046
      Location:230 → 284
      Homeobox; Homeobox domain
      pfam12045
      Location:34 → 174
      DUF3528; Protein of unknown function (DUF3528)
    Nucleotide Protein Strain
    Heading Accession and Version

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